RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 RPSAP08865 295 aaKnown RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 ALADP13716 330 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 GYS1P13807 737 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 GBP2P32456 591 aaPredicted RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 VAMP7P51809 220 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 CLNS1AP54105 237 aaKnown RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 KCNJ2P63252 427 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 PPP3CAQ08209 521 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 TCP10Q12799 353 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 VSTM1Q6UX27 236 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 RNF207Q6ZRF8 634 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 TMEM179Q6ZVK1 233 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 INTS8Q75QN2 995 aaKnown RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 CPNE8Q86YQ8 564 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 MGARPQ8TDB4 240 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 NGLY1Q96IV0 654 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 C8orf37Q96NL8 207 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 POP1Q99575 1024 aaKnown RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 AAASQ9NRG9 546 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 FGFR1OP2Q9NVK5 253 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 WHRNQ9P202 907 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 PI4KBQ9UBF8 816 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 GGT7Q9UJ14 662 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 NOCTQ9UK39 431 aaKnown RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 BCS1LQ9Y276 419 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 SMCHD1A6NHR9 2005 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 PPEF1O14829 653 aaPredicted RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 TP73O15350 636 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 GAS7O60861 476 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 CYP1A2P05177 515 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 BMP3P12645 472 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 CREB1P16220 341 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 ADRA2BP18089 450 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 RWDD2BP57060 319 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 BNIP1Q12981 228 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 RRP1BQ14684 758 aaKnown RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 TATDN1Q6P1N9 297 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 OTUD6AQ7L8S5 288 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 NOP9Q86U38 636 aaKnown RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 GBP7Q8N8V2 638 aaPredicted RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 ZNF564Q8TBZ8 553 aaPredicted RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 SLCO2A1Q92959 643 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 BTBD6Q96KE9 485 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 NUP85Q9BW27 656 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 ZC3H12CQ9C0D7 883 aaKnown RBP13.09□□□□□ -0.31
COL3A1-206ENST00000487010 PCIF1Q9H4Z3 704 aa13.09□□□□□ -0.31
COL3A1-206ENST00000487010 A0A1B0GUA9 196 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 HIP1RO75146 1068 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 ACSL3O95573 720 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 ATP5DP30049 168 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 CRKP46108 304 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 GCLMP48507 274 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 CACNB3P54284 484 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 COPS2P61201 443 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 DOK7Q18PE1 504 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 C1orf220Q5T0J3 134 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 RHBDF2Q6PJF5 856 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 FAM71AQ8IYT1 594 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 DAW1Q8N136 415 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 EPS8L1Q8TE68 723 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 AGAP11Q8TF27 550 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 CKAP2Q8WWK9 683 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 KAT5Q92993 513 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 RSRC1Q96IZ7 334 aaKnown RBP13.08□□□□□ -0.32
COL3A1-206ENST00000487010 L3MBTL3Q96JM7 780 aaPredicted RBP13.08□□□□□ -0.32
COL3A1-206ENST00000487010 TULP1O00294 542 aaPredicted RBP13.08□□□□□ -0.32
COL3A1-206ENST00000487010 O00370 1275 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 IGF2BP3O00425 579 aaKnown RBP eCLIP13.08□□□□□ -0.32
COL3A1-206ENST00000487010 FSCN2O14926 492 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 GJB6O95452 261 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 ANP32DO95626 131 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 ITIH2P19823 946 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 ALDH5A1P51649 535 aaPredicted RBP13.08□□□□□ -0.32
COL3A1-206ENST00000487010 SLC8A3P57103 927 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 KRT17Q04695 432 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 NUGGCQ68CJ6 796 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 SH3BP5LQ7L8J4 393 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 NSMCE1Q8WV22 266 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 PSPC1Q8WXF1 523 aaKnown RBP13.08□□□□□ -0.32
COL3A1-206ENST00000487010 PLCD4Q9BRC7 762 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 UNC45AQ9H3U1 944 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 USP20Q9Y2K6 914 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 C15orf41Q9Y2V0 281 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 ARL2BPQ9Y2Y0 163 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 L3MBTL1Q9Y468 752 aa13.08□□□□□ -0.32
COL3A1-206ENST00000487010 ARHGEF35A5YM69 484 aa13.07□□□□□ -0.32
COL3A1-206ENST00000487010 TISP43B9A030 160 aa13.07□□□□□ -0.32
COL3A1-206ENST00000487010 K7ENM7 598 aa13.07□□□□□ -0.32
COL3A1-206ENST00000487010 GDF11O95390 407 aa13.07□□□□□ -0.32
COL3A1-206ENST00000487010 DLATP10515 647 aaKnown RBP13.07□□□□□ -0.32
COL3A1-206ENST00000487010 CHKAP35790 457 aa13.07□□□□□ -0.32
COL3A1-206ENST00000487010 PSEN1P49768 467 aa13.07□□□□□ -0.32
COL3A1-206ENST00000487010 FMO1Q01740 532 aa13.07□□□□□ -0.32
COL3A1-206ENST00000487010 MAP2K1Q02750 393 aaPredicted RBP13.07□□□□□ -0.32
COL3A1-206ENST00000487010 MYO1EQ12965 1108 aa13.07□□□□□ -0.32
COL3A1-206ENST00000487010 RASA3Q14644 834 aa13.07□□□□□ -0.32
COL3A1-206ENST00000487010 ABCB5Q2M3G0 1257 aa13.07□□□□□ -0.32
COL3A1-206ENST00000487010 SPATA21Q7Z572 469 aa13.07□□□□□ -0.32
COL3A1-206ENST00000487010 ANKRD42Q8N9B4 389 aa13.07□□□□□ -0.32
COL3A1-206ENST00000487010 TMEM174Q8WUU8 243 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms