RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 SPATA20Q8TB22 786 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 PRIMPOLQ96LW4 560 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 PLIN2Q99541 437 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 MINDY3Q9H8M7 445 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 CLDND1Q9NY35 253 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 PRKAG3Q9UGI9 489 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 DNM3Q9UQ16 869 aa18.74■□□□□ 0.59
VIM-205ENST00000485947 FSCN2O14926 492 aa18.73■□□□□ 0.59
VIM-205ENST00000485947 AFMP43652 599 aa18.73■□□□□ 0.59
VIM-205ENST00000485947 DPYDQ12882 1025 aa18.73■□□□□ 0.59
VIM-205ENST00000485947 NOMO2Q5JPE7 1267 aa18.73■□□□□ 0.59
VIM-205ENST00000485947 HACE1Q8IYU2 909 aa18.73■□□□□ 0.59
VIM-205ENST00000485947 TRIML1Q8N9V2 468 aa18.73■□□□□ 0.59
VIM-205ENST00000485947 HELQQ8TDG4 1101 aa18.73■□□□□ 0.59
VIM-205ENST00000485947 MICAL1Q8TDZ2 1067 aa18.73■□□□□ 0.59
VIM-205ENST00000485947 LRRC15Q8TF66 581 aa18.73■□□□□ 0.59
VIM-205ENST00000485947 SMARCE1Q969G3 411 aa18.73■□□□□ 0.59
VIM-205ENST00000485947 GSDMAQ96QA5 445 aa18.73■□□□□ 0.59
VIM-205ENST00000485947 TSPY26PQ9H489 355 aa18.73■□□□□ 0.59
VIM-205ENST00000485947 ZMYM2Q9UBW7 1377 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 INO80B-WBP1J3KQ70 363 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 OFD1O75665 1012 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 PRR29P0C7W0 189 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 CYP11B2P19099 503 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 GLRA2P23416 452 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 LTBRP36941 435 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 TYRO3Q06418 890 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 CAPSQ13938 189 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 PPP2R5AQ15172 486 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 POTEGQ6S5H5 508 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 KCNK18Q7Z418 384 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 GRAMD1CQ8IYS0 662 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 SLC39A11Q8N1S5 342 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 URGCPQ8TCY9 931 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 POLR3FQ9H1D9 316 aaPredicted RBP18.72■□□□□ 0.59
VIM-205ENST00000485947 C2orf40Q9H1Z8 148 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 TLE6Q9H808 572 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 PCDHA5Q9Y5H7 936 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 MYO7AQ13402 2215 aa18.72■□□□□ 0.59
VIM-205ENST00000485947 ARHGEF35A5YM69 484 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 INPPL1O15357 1258 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 TSPAN1O60635 241 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 USO1O60763 962 aaKnown RBP18.71■□□□□ 0.59
VIM-205ENST00000485947 EYA4O95677 639 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 SRGAP2BP0DMP2 458 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 IRS1P35568 1242 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 MBTD1Q05BQ5 628 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 GIT2Q14161 759 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 MCM6Q14566 821 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 STX1AQ16623 288 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 FAM187BQ17R55 369 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 CNNM4Q6P4Q7 775 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 PADI6Q6TGC4 694 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 PPP4R3CPQ6ZMV5 832 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 FAM178BQ8IXR5 827 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 ASAP3Q8TDY4 903 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 C7orf25Q9BPX7 421 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 RSAD1Q9HA92 442 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 BMP2KQ9NSY1 1161 aaPredicted RBP18.71■□□□□ 0.59
VIM-205ENST00000485947 ANO10Q9NW15 660 aa18.71■□□□□ 0.59
VIM-205ENST00000485947 KIAA1671Q9BY89 1806 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 E9PMD0 336 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 CAVIN2O95810 425 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 PLA2G4BP0C869 781 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 BCAR1P56945 870 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 COASYQ13057 564 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 SMAD4Q13485 552 aaKnown RBP18.7■□□□□ 0.58
VIM-205ENST00000485947 GSE1Q14687 1217 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 TMEM31Q5JXX7 168 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 UBXN11Q5T124 520 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 CDCA2Q69YH5 1023 aaPredicted RBP18.7■□□□□ 0.58
VIM-205ENST00000485947 TMEM184AQ6ZMB5 413 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 AGMOQ6ZNB7 445 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 ZBTB8OSQ8IWT0 167 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 SYT2Q8N9I0 419 aaPredicted RBP18.7■□□□□ 0.58
VIM-205ENST00000485947 CCDC47Q96A33 483 aaKnown RBP18.7■□□□□ 0.58
VIM-205ENST00000485947 TMEM169Q96HH4 297 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 TMEM175Q9BSA9 504 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 GTPBP4Q9BZE4 634 aaKnown RBP18.7■□□□□ 0.58
VIM-205ENST00000485947 TRIM9Q9C026 710 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 C11orf16Q9NQ32 467 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 TBC1D13Q9NVG8 400 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 PRMT7Q9NVM4 692 aaPredicted RBP18.7■□□□□ 0.58
VIM-205ENST00000485947 RMND1Q9NWS8 449 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 KCNG1Q9UIX4 513 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 ARID2Q68CP9 1835 aa18.7■□□□□ 0.58
VIM-205ENST00000485947 A0A1B0GUA9 196 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 H3BQ06 376 aaPredicted RBP18.69■□□□□ 0.58
VIM-205ENST00000485947 NAMPTP43490 491 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 NRIP1P48552 1158 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 NLRP12P59046 1061 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 ERVFC1P60507 584 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 RNASELQ05823 741 aaKnown RBP18.69■□□□□ 0.58
VIM-205ENST00000485947 CUL4BQ13620 913 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 KCNB1Q14721 858 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 AMHR2Q16671 573 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 DUSP6Q16828 381 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 EP400NLQ6ZTU2 488 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 STAMQ92783 540 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 KIFAP3Q92845 792 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms