RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 SH2B1Q9NRF2 756 aaPredicted RBP23.87■■□□□ 1.41
USP40-215ENST00000484528 PARP2Q9UGN5 583 aa23.87■■□□□ 1.41
USP40-215ENST00000484528 USP20Q9Y2K6 914 aa23.87■■□□□ 1.41
USP40-215ENST00000484528 GIT1Q9Y2X7 761 aa23.87■■□□□ 1.41
USP40-215ENST00000484528 TRIP11Q15643 1979 aa23.86■■□□□ 1.41
USP40-215ENST00000484528 A0A1B0GUA9 196 aa23.86■■□□□ 1.41
USP40-215ENST00000484528 LILRB3O75022 631 aa23.86■■□□□ 1.41
USP40-215ENST00000484528 CENPBP07199 599 aaPredicted RBP23.86■■□□□ 1.41
USP40-215ENST00000484528 CLCN4P51793 760 aa23.86■■□□□ 1.41
USP40-215ENST00000484528 ORC2Q13416 577 aaPredicted RBP23.86■■□□□ 1.41
USP40-215ENST00000484528 ZBTB8OSQ8IWT0 167 aa23.86■■□□□ 1.41
USP40-215ENST00000484528 B3GALT6Q96L58 329 aa23.86■■□□□ 1.41
USP40-215ENST00000484528 CACNG4Q9UBN1 327 aa23.86■■□□□ 1.41
USP40-215ENST00000484528 STK39Q9UEW8 545 aa23.86■■□□□ 1.41
USP40-215ENST00000484528 NOL7Q9UMY1 257 aaKnown RBP23.86■■□□□ 1.41
USP40-215ENST00000484528 MYBP10242 640 aa23.85■■□□□ 1.41
USP40-215ENST00000484528 CCT6AP40227 531 aaKnown RBP23.85■■□□□ 1.41
USP40-215ENST00000484528 GLUD2P49448 558 aa23.85■■□□□ 1.41
USP40-215ENST00000484528 ECM1Q16610 540 aa23.85■■□□□ 1.41
USP40-215ENST00000484528 TMEM132AQ24JP5 1023 aa23.85■■□□□ 1.41
USP40-215ENST00000484528 ATAT1Q5SQI0 421 aa23.85■■□□□ 1.41
USP40-215ENST00000484528 CDCA2Q69YH5 1023 aaPredicted RBP23.85■■□□□ 1.41
USP40-215ENST00000484528 BMP8AQ7Z5Y6 402 aa23.85■■□□□ 1.41
USP40-215ENST00000484528 KREMEN2Q8NCW0 462 aa23.85■■□□□ 1.41
USP40-215ENST00000484528 GSTCDQ8NEC7 633 aa23.85■■□□□ 1.41
USP40-215ENST00000484528 SFXN1Q9H9B4 322 aa23.85■■□□□ 1.41
USP40-215ENST00000484528 PRMT7Q9NVM4 692 aaPredicted RBP23.85■■□□□ 1.41
USP40-215ENST00000484528 ASGR2P07307 311 aa23.84■■□□□ 1.41
USP40-215ENST00000484528 CYP11B2P19099 503 aa23.84■■□□□ 1.41
USP40-215ENST00000484528 PPP4R3CPQ6ZMV5 832 aa23.84■■□□□ 1.41
USP40-215ENST00000484528 SUGP1Q8IWZ8 645 aaKnown RBP23.84■■□□□ 1.41
USP40-215ENST00000484528 TDRD5Q8NAT2 981 aaKnown RBP23.84■■□□□ 1.41
USP40-215ENST00000484528 ASIC4Q96FT7 647 aa23.84■■□□□ 1.41
USP40-215ENST00000484528 RPS6KC1Q96S38 1066 aa23.84■■□□□ 1.41
USP40-215ENST00000484528 SMOC2Q9H3U7 446 aa23.84■■□□□ 1.41
USP40-215ENST00000484528 FZD8Q9H461 694 aa23.84■■□□□ 1.41
USP40-215ENST00000484528 MTCL1Q9Y4B5 1905 aaKnown RBP23.84■■□□□ 1.41
USP40-215ENST00000484528 TEX28O15482 410 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 NR1I2O75469 434 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 EDN1P05305 212 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 PRKCBP05771 671 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 TRAPPC10P48553 1259 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 GRIK3Q13003 919 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 HAUS3Q68CZ6 603 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 RNF168Q8IYW5 571 aaPredicted RBP23.83■■□□□ 1.41
USP40-215ENST00000484528 FBXL6Q8N531 539 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 C4orf32Q8N8J7 132 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 PRIMPOLQ96LW4 560 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 KIFC3Q9BVG8 833 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 COLEC11Q9BWP8 271 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 BHMT2Q9H2M3 363 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 PDZD7Q9H5P4 517 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 MAN1C1Q9NR34 630 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 LRWD1Q9UFC0 647 aa23.83■■□□□ 1.41
USP40-215ENST00000484528 EFEMP2O95967 443 aa23.82■■□□□ 1.4
USP40-215ENST00000484528 TOB1P50616 345 aaPredicted RBP23.82■■□□□ 1.4
USP40-215ENST00000484528 FXR2P51116 673 aaKnown RBP eCLIP23.82■■□□□ 1.4
USP40-215ENST00000484528 NHLH1Q02575 133 aa23.82■■□□□ 1.4
USP40-215ENST00000484528 PRPF4BQ13523 1007 aaKnown RBP23.82■■□□□ 1.4
USP40-215ENST00000484528 IER5LQ5T953 404 aa23.82■■□□□ 1.4
USP40-215ENST00000484528 GPR149Q86SP6 731 aa23.82■■□□□ 1.4
USP40-215ENST00000484528 DEPTORQ8TB45 409 aa23.82■■□□□ 1.4
USP40-215ENST00000484528 GPR62Q9BZJ7 368 aa23.82■■□□□ 1.4
USP40-215ENST00000484528 C2orf40Q9H1Z8 148 aa23.82■■□□□ 1.4
USP40-215ENST00000484528 PCDHB6Q9Y5E3 794 aa23.82■■□□□ 1.4
USP40-215ENST00000484528 N4BP3O15049 544 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 BRD1O95696 1058 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 PDGFBP01127 241 aaPredicted RBP23.81■■□□□ 1.4
USP40-215ENST00000484528 ADH1AP07327 375 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 PTGDRQ13258 359 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 MTMR3Q13615 1198 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 MAPK6Q16659 721 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 FAM187BQ17R55 369 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 KIAA0319Q5VV43 1072 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 EEF1DP3Q658K8 133 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 FUT10Q6P4F1 479 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 GLYCTKQ8IVS8 523 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 SNX29Q8TEQ0 813 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 PAAF1Q9BRP4 392 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 CCDC113Q9H0I3 377 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 KCNH6Q9H252 994 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 CXCL16Q9H2A7 254 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 SNTG2Q9NY99 539 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 LIMD1Q9UGP4 676 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 SORCS3Q9UPU3 1222 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 KIAA1024Q9UPX6 916 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 CACNA1HO95180 2353 aa23.81■■□□□ 1.4
USP40-215ENST00000484528 PP2D1A8MPX8 630 aa23.8■■□□□ 1.4
USP40-215ENST00000484528 SPATA31D3P0C874 917 aa23.8■■□□□ 1.4
USP40-215ENST00000484528 U2AF2P26368 475 aaKnown RBP eCLIP23.8■■□□□ 1.4
USP40-215ENST00000484528 NAMPTP43490 491 aa23.8■■□□□ 1.4
USP40-215ENST00000484528 VCPP55072 806 aaKnown RBP23.8■■□□□ 1.4
USP40-215ENST00000484528 DSG1Q02413 1049 aa23.8■■□□□ 1.4
USP40-215ENST00000484528 SPATA31D4Q6ZUB0 917 aa23.8■■□□□ 1.4
USP40-215ENST00000484528 CCDC149Q6ZUS6 474 aa23.8■■□□□ 1.4
USP40-215ENST00000484528 ALYREFQ86V81 257 aaKnown RBP23.8■■□□□ 1.4
USP40-215ENST00000484528 PRSS33Q8NF86 280 aa23.8■■□□□ 1.4
USP40-215ENST00000484528 HASPINQ8TF76 798 aa23.8■■□□□ 1.4
USP40-215ENST00000484528 DDX19AQ9NUU7 478 aaKnown RBP23.8■■□□□ 1.4
USP40-215ENST00000484528 ADAM28Q9UKQ2 775 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms