RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 POMGNT1Q8WZA1 660 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 MFSD14AQ96MC6 490 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 TCHPQ9BT92 498 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 KIFC3Q9BVG8 833 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 TARS2Q9BW92 718 aaKnown RBP9.01□□□□□ -0.97
SYNE1-225ENST00000481502 HIPK3Q9H422 1215 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 ASB7Q9H672 318 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 ERVK-5Q9HDB9 667 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 UBN1Q9NPG3 1134 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 C1orf112Q9NSG2 853 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 FANCLQ9NW38 375 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 HSPBP1Q9NZL4 362 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 LIMA1Q9UHB6 759 aaKnown RBP9.01□□□□□ -0.97
SYNE1-225ENST00000481502 ST3GAL5Q9UNP4 418 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 NOC2LQ9Y3T9 749 aaKnown RBP9.01□□□□□ -0.97
SYNE1-225ENST00000481502 ANKRD63C9JTQ0 380 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 CBFA2T2O43439 604 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 PQBP1O60828 265 aaKnown RBP9□□□□□ -0.97
SYNE1-225ENST00000481502 IL18RAPO95256 599 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 EOMESO95936 686 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 TIMP1P01033 207 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 EN2P19622 333 aaPredicted RBP9□□□□□ -0.97
SYNE1-225ENST00000481502 CDK11BP21127 795 aaKnown RBP9□□□□□ -0.97
SYNE1-225ENST00000481502 GRM5P41594 1212 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 PMS1P54277 932 aaKnown RBP9□□□□□ -0.97
SYNE1-225ENST00000481502 STX17P56962 302 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 CLDN10P78369 228 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 FAM189BP81408 668 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 PAK2Q13177 524 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 LPIN1Q14693 890 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 FILIP1LQ4L180 1135 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 PLEKHG4Q58EX7 1191 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 TCP11X2Q5H9J9 407 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 SLC39A4Q6P5W5 647 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 LUZP1Q86V48 1076 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 FAM228AQ86W67 206 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 AOPEPQ8N6M6 819 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 DIS3LQ8TF46 1054 aaKnown RBP9□□□□□ -0.97
SYNE1-225ENST00000481502 SEPT8Q92599 483 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 WNT8BQ93098 351 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 ZBTB10Q96DT7 871 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 IQCDQ96DY2 449 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 BORCS6Q96GS4 357 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 ABHD8Q96I13 439 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 ELAC1Q9H777 363 aaKnown RBP9□□□□□ -0.97
SYNE1-225ENST00000481502 CDHR5Q9HBB8 845 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 RGS18Q9NS28 235 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 TMEM39AQ9NV64 488 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 ARMCX3Q9UH62 379 aaPredicted RBP9□□□□□ -0.97
SYNE1-225ENST00000481502 PADI3Q9ULW8 664 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 GINS2Q9Y248 185 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 DERAQ9Y315 318 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 DAAM1Q9Y4D1 1078 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 SIP14410 1827 aa9□□□□□ -0.97
SYNE1-225ENST00000481502 A0A0U1RQF3 1178 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 GTPBP10A4D1E9 387 aaKnown RBP8.99□□□□□ -0.97
SYNE1-225ENST00000481502 CARNS1A5YM72 827 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 TRIM49BA6NDI0 452 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 KCNJ18B7U540 433 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 FAM189A1O60320 539 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 N4BP1O75113 896 aaKnown RBP8.99□□□□□ -0.97
SYNE1-225ENST00000481502 AKAP3O75969 853 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 KRT13P13646 458 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 PAX3P23760 479 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 ATN1P54259 1190 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-225ENST00000481502 TMEM62Q0P6H9 643 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 CETN1Q12798 172 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 KCNJ12Q14500 433 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 DSC3Q14574 896 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 PSMD6Q15008 389 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 SNRNP35Q16560 246 aaKnown RBP8.99□□□□□ -0.97
SYNE1-225ENST00000481502 MAN2A1Q16706 1144 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 TMEM132AQ24JP5 1023 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 LRRC26Q2I0M4 334 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 ZNF568Q3ZCX4 644 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 MFSD5Q6N075 450 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 SLC24A5Q71RS6 500 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 MRPL10Q7Z7H8 261 aaKnown RBP8.99□□□□□ -0.97
SYNE1-225ENST00000481502 IRF2BP1Q8IU81 584 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 TRIM59Q8IWR1 403 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 FAM186BQ8IYM0 893 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 TMEM199Q8N511 208 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 PGBD4Q96DM1 585 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 FAXDC2Q96IV6 333 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 CBWD1Q9BRT8 395 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 MSTO1Q9BUK6 570 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 CCDC94Q9BW85 323 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-225ENST00000481502 IFIH1Q9BYX4 1025 aaKnown RBP8.99□□□□□ -0.97
SYNE1-225ENST00000481502 RBSNQ9H1K0 784 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 CDT1Q9H211 546 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 HSD3B7Q9H2F3 369 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 PDZD7Q9H5P4 517 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 TOPORSQ9NS56 1045 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-225ENST00000481502 PRKAG2Q9UGJ0 569 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 CPSF3Q9UKF6 684 aaKnown RBP8.99□□□□□ -0.97
SYNE1-225ENST00000481502 ATP11BQ9Y2G3 1177 aa8.99□□□□□ -0.97
SYNE1-225ENST00000481502 CLIC2O15247 247 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 INPPL1O15357 1258 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 XPOTO43592 962 aaKnown RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 MATR3P43243 847 aaKnown RBP eCLIP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms