RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 MAP3K6O95382 1288 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 MFAP3P55082 362 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 KRT71Q3SY84 523 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 KRT39Q6A163 491 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 PRUNE1Q86TP1 453 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 GOLGA5Q8TBA6 731 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 PRPF31Q8WWY3 499 aaKnown RBP14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 PAIP2Q9BPZ3 127 aaKnown RBP14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 SYNJ2BP-COX16A0A087WUM0 186 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 TMEM191BP0C7N4 346 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 POTEJP0CG39 1038 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 MCM3P25205 808 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 HSDL1Q3SXM5 330 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 SEL1L2Q5TEA6 688 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 TSEN2Q8NCE0 465 aaKnown RBP14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 FBXL13Q8NEE6 735 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 TPCN2Q8NHX9 752 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 ARL8AQ96BM9 186 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 COX16Q9P0S2 106 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 UBIAD1Q9Y5Z9 338 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 ALG6Q9Y672 507 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 F5H423 210 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 MAPK4P31152 587 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 IREB2P48200 963 aaKnown RBP14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 ZSCAN26Q16670 478 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 FIGNQ5HY92 759 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 RNF187Q5TA31 235 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 RAB20Q9NX57 234 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 TTC7AQ9ULT0 858 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 STK24Q9Y6E0 443 aa14.78□□□□□ -0.04
CCDC88A-211ENST00000471947 ANO9A1A5B4 782 aa14.77□□□□□ -0.04
CCDC88A-211ENST00000471947 TNFSF9P41273 254 aa14.77□□□□□ -0.04
CCDC88A-211ENST00000471947 NSFP46459 744 aaKnown RBP14.77□□□□□ -0.04
CCDC88A-211ENST00000471947 CCDC33Q8N5R6 958 aa14.77□□□□□ -0.04
CCDC88A-211ENST00000471947 ASAP3Q8TDY4 903 aa14.77□□□□□ -0.04
CCDC88A-211ENST00000471947 RNPC3Q96LT9 517 aaKnown RBP14.77□□□□□ -0.04
CCDC88A-211ENST00000471947 ADGRA3Q8IWK6 1321 aa14.77□□□□□ -0.04
CCDC88A-211ENST00000471947 NHSQ6T4R5 1651 aa14.77□□□□□ -0.04
CCDC88A-211ENST00000471947 COMTP21964 271 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 GNGT1P63211 74 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 PAK2Q13177 524 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 FOXR1Q6PIV2 292 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 SEL1LQ9UBV2 794 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 ZNF214Q9UL59 606 aaPredicted RBP14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 ECM29Q5VYK3 1845 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 CCDC66A2RUB6 948 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 VTNP04004 478 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 ZNF286BP0CG31 522 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 HSD17B4P51659 736 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 SCARA3Q6AZY7 606 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 USP37Q86T82 979 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 NOP9Q86U38 636 aaKnown RBP14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 CRYGNQ8WXF5 182 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 NRBP2Q9NSY0 501 aa14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 UTP11Q9Y3A2 253 aaKnown RBP14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 BZW2Q9Y6E2 419 aaKnown RBP14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 MRPL42Q9Y6G3 142 aaKnown RBP14.77□□□□□ -0.05
CCDC88A-211ENST00000471947 TTLL13PA6NNM8 815 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 GRAP2O75791 330 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 HLA-DRAP01903 254 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 RAP1GAPP47736 663 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 GABPB1Q06547 395 aaPredicted RBP14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 CDO1Q16878 200 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 CCDC38Q502W7 563 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 C7orf31Q8N865 590 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 TTC16Q8NEE8 873 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 ZNF564Q8TBZ8 553 aaPredicted RBP14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 KIFAP3Q92845 792 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 SPON1Q9HCB6 807 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 TBK1Q9UHD2 729 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 ERLIN2O94905 339 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 IFNAR2P48551 515 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 TUBB2AQ13885 445 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 AMHR2Q16671 573 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 GLRA4Q5JXX5 417 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 CASKIN2Q8WXE0 1202 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 TUBB2BQ9BVA1 445 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 MTMR12Q9C0I1 747 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 ASCC2Q9H1I8 757 aaPredicted RBP14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 ARAP2Q8WZ64 1704 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 ADSSP30520 456 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 NUMBP49757 651 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 PRAMEF19Q5SWL8 479 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 GPD1LQ8N335 351 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 NLRP7Q8WX94 980 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 VTI1AQ96AJ9 217 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 OPTNQ96CV9 577 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 MBOAT7Q96N66 472 aa14.76□□□□□ -0.05
CCDC88A-211ENST00000471947 MYO1FO00160 1098 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 ZNF568Q3ZCX4 644 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 CYP4A22Q5TCH4 519 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 TMEM161BQ8NDZ6 487 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 CYFIP2Q96F07 1278 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 SPATC1LQ9H0A9 340 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 PCSK1NQ9UHG2 260 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 KIAA1551Q9HCM1 1747 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 ZMYM2Q9UBW7 1377 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 B4GALT5O43286 388 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 USP2O75604 605 aaPredicted RBP14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 UBA1P22314 1058 aaKnown RBP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms