RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PTENP60484 403 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 FMO1Q01740 532 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 SCYL3Q8IZE3 742 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 ZNF280CQ8ND82 737 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 SLC17A8Q8NDX2 589 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 REPS2Q8NFH8 660 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 BCAS4Q8TDM0 211 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 POMGNT1Q8WZA1 660 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 SEC14L1Q92503 715 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 SHC3Q92529 594 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 DHX38Q92620 1227 aaKnown RBP9.64□□□□□ -0.87
SYNE1-217ENST00000466159 TATDN2Q93075 761 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 GPRASP2Q96D09 838 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 WRNIP1Q96S55 665 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 NTPCRQ9BSD7 190 aaKnown RBP9.64□□□□□ -0.87
SYNE1-217ENST00000466159 CENPHQ9H3R5 247 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 PPP1R1BQ9UD71 204 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-217ENST00000466159 USP20Q9Y2K6 914 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 NFS1Q9Y697 457 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 RLFQ13129 1914 aa9.64□□□□□ -0.87
SYNE1-217ENST00000466159 ZNFX1Q9P2E3 1918 aaKnown RBP9.63□□□□□ -0.87
SYNE1-217ENST00000466159 ZBTB7AO95365 584 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 CYP11B1P15538 503 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 PTPRAP18433 802 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 CTNNA1P35221 906 aaKnown RBP9.63□□□□□ -0.87
SYNE1-217ENST00000466159 IRX5P78411 483 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-217ENST00000466159 TMEM132BQ14DG7 1078 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 C11orf63Q6NUN7 778 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 SV2AQ7L0J3 742 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 OTUD6AQ7L8S5 288 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 UBLCP1Q8WVY7 318 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-217ENST00000466159 KIFAP3Q92845 792 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 LRRC45Q96CN5 670 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 ATP6V1G3Q96LB4 118 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 SENP7Q9BQF6 1050 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 PI4K2AQ9BTU6 479 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 TMEM8AQ9HCN3 771 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 XPNPEP1Q9NQW7 623 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 RAB20Q9NX57 234 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 ZNF214Q9UL59 606 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-217ENST00000466159 COQ4Q9Y3A0 265 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 HNRNPDLO14979 420 aaKnown RBP9.63□□□□□ -0.87
SYNE1-217ENST00000466159 FDX1P10109 184 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 GZMAP12544 262 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 NR1D1P20393 614 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 RPS12P25398 132 aaKnown RBP9.63□□□□□ -0.87
SYNE1-217ENST00000466159 CCT5P48643 541 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 GPC3P51654 580 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 MCCD1P59942 119 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-217ENST00000466159 TGFB2P61812 414 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 DR1Q01658 176 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 GUCY1A3Q02108 690 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 PPARDQ03181 441 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 CYP24A1Q07973 514 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 KDM7AQ6ZMT4 941 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 CCDC60Q8IWA6 550 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-217ENST00000466159 ZDHHC14Q8IZN3 488 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 FBXL13Q8NEE6 735 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 RDM1Q8NG50 284 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 NSUN6Q8TEA1 469 aaKnown RBP9.63□□□□□ -0.87
SYNE1-217ENST00000466159 ATP8B4Q8TF62 1192 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 SLC16A10Q8TF71 515 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 SPIRE2Q8WWL2 714 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 MFSD14AQ96MC6 490 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 FBXL18Q96ME1 805 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 NAP1L3Q99457 506 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-217ENST00000466159 ZSWIM1Q9BR11 485 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 TMBIM4Q9HC24 238 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 SEPT9Q9UHD8 586 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-217ENST00000466159 PNMA2Q9UL42 364 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 TRPC6Q9Y210 931 aa9.63□□□□□ -0.87
SYNE1-217ENST00000466159 DOCK1Q14185 1865 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 GOLGA6L10A0A0M3HER8 536 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 ZEB2O60315 1214 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 DSG3P32926 999 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 PEX5P50542 639 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 DHX9Q08211 1270 aaKnown RBP9.62□□□□□ -0.87
SYNE1-217ENST00000466159 ZNF844Q08AG5 666 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 TCEAL1Q15170 157 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 XRRA1Q6P2D8 792 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 LRIG3Q6UXM1 1119 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 TAS1R3Q7RTX0 852 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 TMC3Q7Z5M5 1100 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 C10orf67Q8IYJ2 551 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 UBL4BQ8N7F7 174 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 ATP6V0A1Q93050 837 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 HVCN1Q96D96 273 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 C18orf8Q96DM3 657 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 NT5C1BQ96P26 610 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 FAM213AQ9BRX8 229 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 NUP85Q9BW27 656 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 JPH1Q9HDC5 661 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-217ENST00000466159 PDLIM7Q9NR12 457 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 PICK1Q9NRD5 415 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 FAM114A2Q9NRY5 505 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 ARID2Q68CP9 1835 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 MIF4GDA9UHW6 222 aaKnown RBP9.62□□□□□ -0.87
SYNE1-217ENST00000466159 HMGB1P1B2RPK0 211 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-217ENST00000466159 MAFGO15525 162 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 PSAPP07602 524 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms