RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 HCSTQ9UBK5 93 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 INPP5FQ9Y2H2 1132 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 GIT1Q9Y2X7 761 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 ATG2AQ2TAZ0 1938 aa14.35□□□□□ -0.11
COL28A1-206ENST00000465339 ZMYM2Q9UBW7 1377 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 ARL5CA6NH57 179 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 H0YCG3 227 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 PPP1R37O75864 691 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 KRT18P05783 430 aaKnown RBP14.34□□□□□ -0.11
COL28A1-206ENST00000465339 DNAJB1P25685 340 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 BCAR1P56945 870 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 PKP1Q13835 747 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 CAMK1Q14012 370 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 AAK1Q2M2I8 961 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 NT5DC1Q5TFE4 455 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 ATF7IP2Q5U623 682 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 CDR2LQ86X02 465 aaPredicted RBP14.34□□□□□ -0.11
COL28A1-206ENST00000465339 LRRC15Q8TF66 581 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 MRPS27Q92552 414 aaKnown RBP14.34□□□□□ -0.11
COL28A1-206ENST00000465339 PPP2R3CQ969Q6 453 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 FAM193BQ96PV7 902 aaPredicted RBP14.34□□□□□ -0.11
COL28A1-206ENST00000465339 REEP2Q9BRK0 252 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 MRPL4Q9BYD3 311 aaKnown RBP14.34□□□□□ -0.11
COL28A1-206ENST00000465339 PDZD7Q9H5P4 517 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 NRDE2Q9H7Z3 1164 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 PRDM6Q9NQX0 595 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 HES2Q9Y543 173 aa14.34□□□□□ -0.11
COL28A1-206ENST00000465339 NPHP3-ACAD11A0A0J9YXS1 232 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 SLC16A4O15374 487 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 CUTAO60888 179 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 ZC3H11AO75152 810 aaKnown RBP eCLIP14.33□□□□□ -0.12
COL28A1-206ENST00000465339 BRD1O95696 1058 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 ALDH2P05091 517 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 ZNF131P52739 623 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 MRPS5P82675 430 aaKnown RBP14.33□□□□□ -0.12
COL28A1-206ENST00000465339 STRN3Q13033 797 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 GIT2Q14161 759 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 DCAF4L1Q3SXM0 396 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 SV2BQ7L1I2 683 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 SLC39A11Q8N1S5 342 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 KCNG4Q8TDN1 519 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 MICAL1Q8TDZ2 1067 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 KCNN1Q92952 543 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 GAD1Q99259 594 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 ACO2Q99798 780 aaKnown RBP14.33□□□□□ -0.12
COL28A1-206ENST00000465339 TMEM175Q9BSA9 504 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 NXF3Q9H4D5 531 aaKnown RBP14.33□□□□□ -0.12
COL28A1-206ENST00000465339 TLR9Q9NR96 1032 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 PARP2Q9UGN5 583 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 TNFSF13BQ9Y275 285 aa14.33□□□□□ -0.12
COL28A1-206ENST00000465339 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.32□□□□□ -0.12
COL28A1-206ENST00000465339 TBCAO75347 108 aaKnown RBP14.32□□□□□ -0.12
COL28A1-206ENST00000465339 DDHD2O94830 711 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 FAM13AO94988 1023 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 POMCP01189 267 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 EDN1P05305 212 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 GALTP07902 379 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 AKAP5P24588 427 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 ABCD1P33897 745 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 MLH1P40692 756 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 STAT6P42226 847 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 NCKAP1LP55160 1127 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 BMS1Q14692 1282 aaKnown RBP14.32□□□□□ -0.12
COL28A1-206ENST00000465339 FOXD4L6Q3SYB3 417 aaPredicted RBP14.32□□□□□ -0.12
COL28A1-206ENST00000465339 TCEAL5Q5H9L2 206 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 FOXD4L3Q6VB84 417 aaPredicted RBP14.32□□□□□ -0.12
COL28A1-206ENST00000465339 ZNF280BQ86YH2 543 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 MYCT1Q8N699 235 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 TMEM161BQ8NDZ6 487 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 TMEM169Q96HH4 297 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 APOL6Q9BWW8 343 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 GBP3Q9H0R5 595 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 PARVGQ9HBI0 331 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 STK39Q9UEW8 545 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 RCOR1Q9UKL0 485 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 USP20Q9Y2K6 914 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 ATP6V1DQ9Y5K8 247 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 BRWD1Q9NSI6 2320 aa14.32□□□□□ -0.12
COL28A1-206ENST00000465339 NT5C1B-RDH14C9J2C7 533 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 NR1I2O75469 434 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 MAPTP10636 758 aaKnown RBP14.31□□□□□ -0.12
COL28A1-206ENST00000465339 PBX3P40426 434 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 AFF1P51825 1210 aaKnown RBP14.31□□□□□ -0.12
COL28A1-206ENST00000465339 ERVFC1P60507 584 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 DNM1Q05193 864 aaKnown RBP14.31□□□□□ -0.12
COL28A1-206ENST00000465339 COL19A1Q14993 1142 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 EEF1DP3Q658K8 133 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 ZPBP2Q6X784 338 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 TAS1R3Q7RTX0 852 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 HAUS6Q7Z4H7 955 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 PABPC5Q96DU9 382 aaKnown RBP14.31□□□□□ -0.12
COL28A1-206ENST00000465339 IGSF21Q96ID5 467 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 ZFP42Q96MM3 310 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 ASB2Q96Q27 587 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 TCHPQ9BT92 498 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 TARS2Q9BW92 718 aaKnown RBP14.31□□□□□ -0.12
COL28A1-206ENST00000465339 PANK2Q9BZ23 570 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 PTPRHQ9HD43 1115 aa14.31□□□□□ -0.12
COL28A1-206ENST00000465339 NGRNQ9NPE2 291 aaKnown RBP14.31□□□□□ -0.12
COL28A1-206ENST00000465339 MIOSQ9NXC5 875 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms