RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 MAPK7Q13164 816 aa17.76■□□□□ 0.43
COL7A1-203ENST00000459756 GIT2Q14161 759 aa17.76■□□□□ 0.43
COL7A1-203ENST00000459756 APBB1IPQ7Z5R6 666 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-203ENST00000459756 COLGALT2Q8IYK4 626 aa17.76■□□□□ 0.43
COL7A1-203ENST00000459756 SMRP1Q8NCR6 262 aa17.76■□□□□ 0.43
COL7A1-203ENST00000459756 VN1R2Q8NFZ6 395 aa17.76■□□□□ 0.43
COL7A1-203ENST00000459756 CALML4Q96GE6 196 aa17.76■□□□□ 0.43
COL7A1-203ENST00000459756 PLIN2Q99541 437 aa17.76■□□□□ 0.43
COL7A1-203ENST00000459756 PARP2Q9UGN5 583 aa17.76■□□□□ 0.43
COL7A1-203ENST00000459756 KCNG1Q9UIX4 513 aa17.76■□□□□ 0.43
COL7A1-203ENST00000459756 RBM19Q9Y4C8 960 aaKnown RBP17.76■□□□□ 0.43
COL7A1-203ENST00000459756 IRAK3Q9Y616 596 aa17.76■□□□□ 0.43
COL7A1-203ENST00000459756 TDRD15B5MCY1 1934 aaKnown RBP17.76■□□□□ 0.43
COL7A1-203ENST00000459756 NR1I2O75469 434 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 EDN1P05305 212 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 PLA2G4BP0C869 781 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 SLC12A3P55017 1021 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 RESTQ13127 1097 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 KCNC3Q14003 757 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 DCAF4L1Q3SXM0 396 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 ATF7IP2Q5U623 682 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 GJD3Q8N144 294 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 GSTCDQ8NEC7 633 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 RPS6KC1Q96S38 1066 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 TMEM134Q9H6X4 195 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 KMT5AQ9NQR1 393 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 MIOSQ9NXC5 875 aa17.75■□□□□ 0.43
COL7A1-203ENST00000459756 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-203ENST00000459756 CA8P35219 290 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 OR1G1P47890 313 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 RBM10P98175 930 aaKnown RBP17.74■□□□□ 0.43
COL7A1-203ENST00000459756 ZP2Q05996 745 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 GRIK3Q13003 919 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 NT5DC1Q5TFE4 455 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 ADHFE1Q8IWW8 467 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 TMEM87AQ8NBN3 555 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 NTPCRQ9BSD7 190 aaKnown RBP17.74■□□□□ 0.43
COL7A1-203ENST00000459756 VN1R3Q9BXE9 311 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 FOXD4L1Q9NU39 408 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 KLK14Q9P0G3 267 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 ARHGAP28Q9P2N2 729 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 MTMR6Q9Y217 621 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 USP20Q9Y2K6 914 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 CLIC4Q9Y696 253 aa17.74■□□□□ 0.43
COL7A1-203ENST00000459756 STX6O43752 255 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 PLS3P13797 630 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 SSTR3P32745 418 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-203ENST00000459756 GRIN1Q05586 938 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 RAD51AP2Q09MP3 1159 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 PTPAQ15257 358 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 EEF1DP3Q658K8 133 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 ANKRD54Q6NXT1 300 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 RASSF8Q8NHQ8 419 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 SPIRE2Q8WWL2 714 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 CASP10Q92851 521 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 POP1Q99575 1024 aaKnown RBP17.73■□□□□ 0.43
COL7A1-203ENST00000459756 COLEC11Q9BWP8 271 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 MRPL4Q9BYD3 311 aaKnown RBP17.73■□□□□ 0.43
COL7A1-203ENST00000459756 ZSCAN16Q9H4T2 348 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-203ENST00000459756 CD320Q9NPF0 282 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 MARCH5Q9NX47 278 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 SNTG2Q9NY99 539 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 TNFSF13BQ9Y275 285 aa17.73■□□□□ 0.43
COL7A1-203ENST00000459756 PRG3Q9Y2Y8 225 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-203ENST00000459756 SFI1A8K8P3 1242 aa17.72■□□□□ 0.43
COL7A1-203ENST00000459756 CLASP2O75122 1294 aaKnown RBP17.72■□□□□ 0.43
COL7A1-203ENST00000459756 RECQL4O94761 1208 aa17.72■□□□□ 0.43
COL7A1-203ENST00000459756 HOXB8P17481 243 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-203ENST00000459756 SMTNP53814 917 aa17.72■□□□□ 0.43
COL7A1-203ENST00000459756 PTPN14Q15678 1187 aa17.72■□□□□ 0.43
COL7A1-203ENST00000459756 LLGL2Q6P1M3 1020 aa17.72■□□□□ 0.43
COL7A1-203ENST00000459756 HSCBQ8IWL3 235 aa17.72■□□□□ 0.43
COL7A1-203ENST00000459756 AUTS2Q8WXX7 1259 aa17.72■□□□□ 0.43
COL7A1-203ENST00000459756 ACO2Q99798 780 aaKnown RBP17.72■□□□□ 0.43
COL7A1-203ENST00000459756 CCSER1Q9C0I3 900 aa17.72■□□□□ 0.43
COL7A1-203ENST00000459756 USP15Q9Y4E8 981 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-203ENST00000459756 HCFC2Q9Y5Z7 792 aa17.72■□□□□ 0.43
COL7A1-203ENST00000459756 MYH11P35749 1972 aa17.71■□□□□ 0.43
COL7A1-203ENST00000459756 C19orf67A6NJJ6 358 aa17.71■□□□□ 0.43
COL7A1-203ENST00000459756 SLC16A4O15374 487 aa17.71■□□□□ 0.43
COL7A1-203ENST00000459756 SOD2P04179 222 aa17.71■□□□□ 0.43
COL7A1-203ENST00000459756 PLCG1P19174 1290 aa17.71■□□□□ 0.43
COL7A1-203ENST00000459756 TUSC3Q13454 348 aa17.71■□□□□ 0.43
COL7A1-203ENST00000459756 KARSQ15046 597 aaKnown RBP17.71■□□□□ 0.43
COL7A1-203ENST00000459756 ARSHQ5FYA8 562 aa17.71■□□□□ 0.43
COL7A1-203ENST00000459756 FAM173BQ6P4H8 233 aa17.71■□□□□ 0.43
COL7A1-203ENST00000459756 MRPL17Q9NRX2 175 aaKnown RBP17.71■□□□□ 0.43
COL7A1-203ENST00000459756 LARSQ9P2J5 1176 aaKnown RBP17.71■□□□□ 0.43
COL7A1-203ENST00000459756 FBXO2Q9UK22 296 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-203ENST00000459756 ODF2LQ9ULJ1 636 aa17.71■□□□□ 0.43
COL7A1-203ENST00000459756 SSX2IPQ9Y2D8 614 aa17.71■□□□□ 0.43
COL7A1-203ENST00000459756 SRPRBQ9Y5M8 271 aaKnown RBP17.71■□□□□ 0.43
COL7A1-203ENST00000459756 MORC2Q9Y6X9 1032 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-203ENST00000459756 H0YCG3 227 aa17.7■□□□□ 0.42
COL7A1-203ENST00000459756 PTGESO14684 152 aa17.7■□□□□ 0.42
COL7A1-203ENST00000459756 EFEMP2O95967 443 aa17.7■□□□□ 0.42
COL7A1-203ENST00000459756 THP07101 528 aa17.7■□□□□ 0.42
COL7A1-203ENST00000459756 MARCKSP29966 332 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-203ENST00000459756 STRN3Q13033 797 aa17.7■□□□□ 0.42
COL7A1-203ENST00000459756 TPRNQ4KMQ1 711 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms