RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 FGGP02679 453 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 FXR1P51114 621 aaKnown RBP eCLIP7.91□□□□□ -1.14
SYNE1-213ENST00000448038 MTF1Q14872 753 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 HHATQ5VTY9 493 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 IL17RAQ96F46 866 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 CHP1Q99653 195 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 ABHD16BQ9H3Z7 469 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 TUT1Q9H6E5 874 aaKnown RBP7.91□□□□□ -1.14
SYNE1-213ENST00000448038 FHOD1Q9Y613 1164 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 PPP2R5CQ13362 524 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 GEN1Q17RS7 908 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 CLMNQ96JQ2 1002 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 CALCOCO1Q9P1Z2 691 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 MEIS2O14770 477 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 CYP3A4P08684 503 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 CLTAP09496 248 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 ZNF286BP0CG31 522 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 SDC4P31431 198 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 THPOP40225 353 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 PLTPP55058 493 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 RNF10Q8N5U6 811 aaKnown RBP7.91□□□□□ -1.14
SYNE1-213ENST00000448038 SLITRK6Q9H5Y7 841 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 VTA1Q9NP79 307 aa7.91□□□□□ -1.14
SYNE1-213ENST00000448038 DBR1Q9UK59 544 aaKnown RBP7.91□□□□□ -1.14
SYNE1-213ENST00000448038 SLITRK3O94933 977 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 CD4P01730 458 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 VTNP04004 478 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 CPB1P15086 417 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 GUCY2CP25092 1073 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 CHADLQ6NUI6 762 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 ELMSAN1Q6PJG2 1045 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 APPL2Q8NEU8 664 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 TRAPPC3O43617 180 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 EVI5O60447 810 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 MYBL1P10243 752 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 KIZQ2M2Z5 673 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 SEZ6Q53EL9 994 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 FAM102AQ5T9C2 384 aaPredicted RBP7.9□□□□□ -1.14
SYNE1-213ENST00000448038 BTNL9Q6UXG8 535 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 CALR3Q96L12 384 aaKnown RBP7.9□□□□□ -1.14
SYNE1-213ENST00000448038 PNMA5Q96PV4 448 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 EBAG9O00559 213 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 UPP2O95045 317 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 TJP3O95049 919 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 RARRES1P49788 294 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 YWHAGP61981 247 aaKnown RBP eCLIP7.9□□□□□ -1.14
SYNE1-213ENST00000448038 NOP14P78316 857 aaKnown RBP7.9□□□□□ -1.14
SYNE1-213ENST00000448038 BASP1P80723 227 aaKnown RBP7.9□□□□□ -1.14
SYNE1-213ENST00000448038 RWDD4Q6NW29 188 aaKnown RBP7.9□□□□□ -1.14
SYNE1-213ENST00000448038 GLB1LQ6UWU2 654 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 ARHGEF18Q6ZSZ5 1173 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 ZNF720Q7Z2F6 126 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 ATP8B4Q8TF62 1192 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 SOCS4Q8WXH5 440 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 CYP39A1Q9NYL5 469 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 ALS2Q96Q42 1657 aa7.9□□□□□ -1.14
SYNE1-213ENST00000448038 EML1O00423 815 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 TFRCP02786 760 aaKnown RBP7.9□□□□□ -1.15
SYNE1-213ENST00000448038 PSMC4P43686 418 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 KLK7P49862 253 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 INHBEP58166 350 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 TRIP13Q15645 432 aaPredicted RBP7.9□□□□□ -1.15
SYNE1-213ENST00000448038 C6orf163Q5TEZ5 329 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 SLC51AQ86UW1 340 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 PCSK9Q8NBP7 692 aaKnown RBP7.9□□□□□ -1.15
SYNE1-213ENST00000448038 CCDC110Q8TBZ0 833 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 RFFLQ8WZ73 363 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 UPF1Q92900 1129 aaKnown RBP eCLIP7.9□□□□□ -1.15
SYNE1-213ENST00000448038 ATP2A3Q93084 1043 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 RBM41Q96IZ5 413 aaKnown RBP7.9□□□□□ -1.15
SYNE1-213ENST00000448038 PI4K2AQ9BTU6 479 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 SLC38A7Q9NVC3 462 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 PCSK1NQ9UHG2 260 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 LCMT1Q9UIC8 334 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 STAP1Q9ULZ2 295 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 DIS3Q9Y2L1 958 aaKnown RBP7.9□□□□□ -1.15
SYNE1-213ENST00000448038 ANO9A1A5B4 782 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 SPDYE16A6NNV3 312 aaPredicted RBP7.9□□□□□ -1.15
SYNE1-213ENST00000448038 USP27XA6NNY8 438 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 NFKBIEO00221 500 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 PIK3CDO00329 1044 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 OGTO15294 1046 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 P4HA2O15460 535 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 SRGAP2O75044 1071 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 RTN2O75298 545 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 INSRRP14616 1297 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 KCNJ6P48051 423 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 SOX10P56693 466 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 TMEM132BQ14DG7 1078 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 RBBP8NLQ8NC74 664 aaPredicted RBP7.9□□□□□ -1.15
SYNE1-213ENST00000448038 MTMR14Q8NCE2 650 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 SMC1BQ8NDV3 1235 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 CBWD1Q9BRT8 395 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 HEMGNQ9BXL5 484 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 IP6K2Q9UHH9 426 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 ANAPC5Q9UJX4 755 aa7.9□□□□□ -1.15
SYNE1-213ENST00000448038 SYNGAP1Q96PV0 1343 aa7.89□□□□□ -1.15
SYNE1-213ENST00000448038 ROBO3Q96MS0 1386 aa7.89□□□□□ -1.15
SYNE1-213ENST00000448038 SCN11AQ9UI33 1791 aa7.89□□□□□ -1.15
SYNE1-213ENST00000448038 BUB1BO60566 1050 aaPredicted RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms