RNA–Protein interactions for RNA: ENST00000440127.1

HMGB3P11-201, Transcript of high mobility group box 3 pseudogene 11, humanhuman

BASIC

Gene HMGB3P11, Length 604 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P11-201ENST00000440127 RIN1Q13671 783 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 CFAP100Q494V2 611 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 DALRD3Q5D0E6 543 aaKnown RBP4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 PIK3R6Q5UE93 754 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 KRT40Q6A162 431 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 MFSD5Q6N075 450 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 MAMDC4Q6UXC1 1216 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 RTN4RL1Q86UN2 441 aaPredicted RBP4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 KIF18BQ86Y91 864 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 PHYKPLQ8IUZ5 450 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 C1orf210Q8IVY1 113 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 TCP11L2Q8N4U5 519 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 KIAA1958Q8N8K9 716 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 CFHR4Q92496 578 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 WDR92Q96MX6 357 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 TUBGCP5Q96RT8 1024 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 TLR9Q9NR96 1032 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 TYW1Q9NV66 732 aaKnown RBP4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 B4GALT6Q9UBX8 382 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 CTDP1Q9Y5B0 961 aaPredicted RBP4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 TNPO3Q9Y5L0 923 aaKnown RBP4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 A2ML1A8K2U0 1454 aa4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 NKTRP30414 1462 aaKnown RBP4.3□□□□□ -1.72
HMGB3P11-201ENST00000440127 A0A1W2PP64 1363 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 ZMYM3Q14202 1370 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 ABCC11Q96J66 1382 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 USP32Q8NFA0 1604 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 ALKQ9UM73 1620 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 RASSF10A6NK89 507 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 NRP1O14786 923 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 FYB1O15117 783 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 ZNF202O95125 648 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 U2AF1L5P0DN76 240 aaPredicted RBP4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 ZBTB48P10074 688 aaPredicted RBP4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 CD40P25942 277 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 U2AF1Q01081 240 aaKnown RBP eCLIP4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 DUSP8Q13202 625 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 SART3Q15020 963 aaKnown RBP4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 C20orf194Q5TEA3 1177 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 ABHD17CQ6PCB6 329 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 KRT26Q7Z3Y9 468 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 DYDC2Q96IM9 177 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 PNNQ9H307 717 aaKnown RBP4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 MYH16Q9H6N6 1097 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 USP36Q9P275 1121 aaKnown RBP4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 RRP7AQ9Y3A4 280 aaKnown RBP4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 CD2APQ9Y5K6 639 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 DLC1Q96QB1 1528 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 PTPRMP28827 1452 aa4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 ARHGEF28Q8N1W1 1705 aaKnown RBP4.29□□□□□ -1.72
HMGB3P11-201ENST00000440127 SPATA31D1Q6ZQQ2 1576 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 WDR33Q9C0J8 1336 aaKnown RBP4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 CBX4O00257 560 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 MATN2O00339 956 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 SUV39H1O43463 412 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 BCAR3O75815 825 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 DNAJC8O75937 253 aaPredicted RBP4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 IPO13O94829 963 aaKnown RBP4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 FSBPO95073 299 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 ASMTLO95671 621 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 PEX11BO96011 259 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 JUNP05412 331 aaKnown RBP4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 ADH4P08319 380 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 PDGFRBP09619 1106 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 JMJD7P0C870 316 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 KCNA6P17658 529 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 POU3F3P20264 500 aaPredicted RBP4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 BPIFB4P59827 614 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 TGFB2P61812 414 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 SMAD3P84022 425 aaKnown RBP4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 FOXL1Q12952 345 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 ADAM15Q13444 863 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 TCIRG1Q13488 830 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 TBR1Q16650 682 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 LSM12Q3MHD2 195 aaKnown RBP4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 TM4SF20Q53R12 229 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 CENPQQ7L2Z9 268 aaPredicted RBP4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 AHI1Q8N157 1196 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 PPM1KQ8N3J5 372 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 ZNF808Q8N4W9 903 aaPredicted RBP4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 ARL8AQ96BM9 186 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 MIEF2Q96C03 454 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 FOXRED1Q96CU9 486 aaPredicted RBP4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 HIST1H2AHQ96KK5 128 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 HIST1H2AJQ99878 128 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 ORAI3Q9BRQ5 295 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 MRIQ9BWK5 157 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 PLAAQ9Y263 795 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 SPO11Q9Y5K1 396 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 HS3ST3A1Q9Y663 406 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 MED14O60244 1454 aa4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 CFAP65Q6ZU64 1925 aaKnown RBP4.28□□□□□ -1.72
HMGB3P11-201ENST00000440127 TNRQ92752 1358 aa4.27□□□□□ -1.73
HMGB3P11-201ENST00000440127 ARHGEF40Q8TER5 1519 aa4.27□□□□□ -1.73
HMGB3P11-201ENST00000440127 CLTCQ00610 1675 aaKnown RBP4.27□□□□□ -1.73
HMGB3P11-201ENST00000440127 CD163L1Q9NR16 1453 aa4.27□□□□□ -1.73
HMGB3P11-201ENST00000440127 NRP2O60462 931 aa4.27□□□□□ -1.73
HMGB3P11-201ENST00000440127 MAKP20794 623 aa4.27□□□□□ -1.73
HMGB3P11-201ENST00000440127 ANP32AP39687 249 aaKnown RBP4.27□□□□□ -1.73
HMGB3P11-201ENST00000440127 RGS3P49796 1198 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms