RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 SLC1A1P43005 524 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 VAMP7P51809 220 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 LACTBP83111 547 aaPredicted RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 MAP2K1Q02750 393 aaPredicted RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 CENPCQ03188 943 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 IKQ13123 557 aaPredicted RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 ZNF211Q13398 564 aaPredicted RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 ACVR2BQ13705 512 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 PTK6Q13882 451 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 ARHGAP44Q17R89 818 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 FAM98CQ17RN3 349 aaKnown RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 SPRED3Q2MJR0 410 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 PHLDB3Q6NSJ2 640 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 RNF207Q6ZRF8 634 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 RELL1Q8IUW5 271 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 TPH2Q8IWU9 490 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 FAM71AQ8IYT1 594 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 RPUSD2Q8IZ73 545 aaKnown RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 CFAP61Q8NHU2 1237 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 ZNF564Q8TBZ8 553 aaPredicted RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 CKAP2Q8WWK9 683 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 DYDC2Q96IM9 177 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 RIT2Q99578 217 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 TEKT3Q9BXF9 490 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 ZC3H12CQ9C0D7 883 aaKnown RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 UBE2TQ9NPD8 197 aaPredicted RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 TMOD4Q9NZQ9 345 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 PCDH10Q9P2E7 1040 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 ADGRA3Q8IWK6 1321 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 EML1O00423 815 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 LIN7AO14910 233 aaPredicted RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 SORBS3O60504 671 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 LUC7L3O95232 432 aaKnown RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 NDUFB10O96000 172 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 SERPINB2P05120 415 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 ABHD2P08910 425 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 POLR2MP0CAP2 368 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 TRIM49P0CI25 452 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 TRIM49CP0CI26 452 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 CLNS1AP54105 237 aaKnown RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 COPS2P61201 443 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 IFI35P80217 286 aaPredicted RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 KCNA1Q09470 495 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 PTP4A2Q12974 167 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 BNIP1Q12981 228 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 STRN3Q13033 797 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 RRP1BQ14684 758 aaKnown RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 TNIP1Q15025 636 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 RNF43Q68DV7 783 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 APOBEC3HQ6NTF7 200 aaKnown RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 TTC27Q6P3X3 843 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 ENOSF1Q7L5Y1 443 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 SPATA21Q7Z572 469 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 XXYLT1Q8NBI6 393 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 FBF1Q8TES7 1133 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 ARHGEF2Q92974 986 aaKnown RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 MIEF2Q96C03 454 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 TRAIPQ9BWF2 469 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 TMX4Q9H1E5 349 aaPredicted RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 RXFP1Q9HBX9 757 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 UBN1Q9NPG3 1134 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 TXLNGQ9NUQ3 528 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 NKIRAS1Q9NYS0 192 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 TAS2R14Q9NYV8 317 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 RGL1Q9NZL6 768 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 BAIAP2L1Q9UHR4 511 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 DBR1Q9UK59 544 aaKnown RBP11.81□□□□□ -0.52
LIMS1-207ENST00000422797 EXOC7Q9UPT5 735 aa11.81□□□□□ -0.52
LIMS1-207ENST00000422797 EMSYQ7Z589 1322 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 THSD7AQ9UPZ6 1657 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 E7ENQ6 273 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 ATP2C2O75185 946 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 TTC4O95801 387 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 CALRP27797 417 aaKnown RBP11.8□□□□□ -0.52
LIMS1-207ENST00000422797 GTF2H1P32780 548 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 MXI1P50539 228 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 SLC18A1P54219 525 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 NCALDP61601 193 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 MESDQ14696 234 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 STAT4Q14765 748 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 ABCB5Q2M3G0 1257 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 ZC2HC1CQ53FD0 456 aaPredicted RBP11.8□□□□□ -0.52
LIMS1-207ENST00000422797 SPDYAQ5MJ70 313 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 MEX3CQ5U5Q3 659 aaKnown RBP11.8□□□□□ -0.52
LIMS1-207ENST00000422797 RHBDF2Q6PJF5 856 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 NIPA1Q7RTP0 329 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 EXOC3L1Q86VI1 746 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 DNAAF5Q86Y56 855 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 LARGE2Q8N3Y3 721 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 PROCA1Q8NCQ7 364 aaPredicted RBP11.8□□□□□ -0.52
LIMS1-207ENST00000422797 EPS8L3Q8TE67 593 aaKnown RBP11.8□□□□□ -0.52
LIMS1-207ENST00000422797 EPS8L1Q8TE68 723 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 DHX38Q92620 1227 aaKnown RBP11.8□□□□□ -0.52
LIMS1-207ENST00000422797 KRT35Q92764 455 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 MAGEB18Q96M61 343 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 CDC42EP4Q9H3Q1 356 aaKnown RBP11.8□□□□□ -0.52
LIMS1-207ENST00000422797 ECT2Q9H8V3 914 aa11.8□□□□□ -0.52
LIMS1-207ENST00000422797 AVENQ9NQS1 362 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms