RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 DNAJC18Q9H819 358 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 ZNF287Q9HBT7 754 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.46□□□□□ -0.58
USP54-204ENST00000422491 NMRK1Q9NWW6 199 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 EURLQ9NYK6 297 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 CTTNBP2NLQ9P2B4 639 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 MTUS1Q9ULD2 1270 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 ACTL7BQ9Y614 415 aa11.46□□□□□ -0.58
USP54-204ENST00000422491 TGFB1I1O43294 461 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 ECE2O60344 883 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 PPP1R11O60927 126 aaPredicted RBP11.45□□□□□ -0.58
USP54-204ENST00000422491 CHRNB2P17787 502 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 STAT3P40763 770 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 FMO5P49326 533 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 EVA1CP58658 441 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 PSMC6P62333 389 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 KYNUQ16719 465 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 SPTY2D1Q68D10 685 aaPredicted RBP11.45□□□□□ -0.58
USP54-204ENST00000422491 MAPKAPK5Q8IW41 473 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 UCMAQ8WVF2 138 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 TLE6Q9H808 572 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 DCLRE1BQ9H816 532 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 SEPT11Q9NVA2 429 aaKnown RBP11.45□□□□□ -0.58
USP54-204ENST00000422491 NAALADL1Q9UQQ1 740 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 MYO3BQ8WXR4 1341 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 TMEM110-MUSTN1A8MSY1 372 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 MAPK13O15264 365 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 RNF8O76064 485 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 IVDP26440 423 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 CRKLP46109 303 aaKnown RBP11.45□□□□□ -0.58
USP54-204ENST00000422491 PPP4CP60510 307 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 IL9RQ01113 521 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 FOXB2Q5VYV0 432 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 TXNRD3Q86VQ6 643 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 CATSPER3Q86XQ3 398 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 SYT2Q8N9I0 419 aaPredicted RBP11.45□□□□□ -0.58
USP54-204ENST00000422491 KIFAP3Q92845 792 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 WNT8AQ9H1J5 351 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 BCAS3Q9H6U6 928 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 TBK1Q9UHD2 729 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 RSPH10B2B2RC85 870 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 UBAP1LF5GYI3 381 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 TULP1O00294 542 aaPredicted RBP11.45□□□□□ -0.58
USP54-204ENST00000422491 NVLO15381 856 aaKnown RBP11.45□□□□□ -0.58
USP54-204ENST00000422491 CDH16O75309 829 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 DCTN3O75935 186 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 ASMTLO95671 621 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 RSPH10BP0C881 870 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 ITIH2P19823 946 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 KRT17Q04695 432 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 ADCY1Q08828 1119 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 PABPC4Q13310 644 aaKnown RBP eCLIP11.45□□□□□ -0.58
USP54-204ENST00000422491 MUM1Q2TAK8 710 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 TBC1D25Q3MII6 688 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 CBWD6Q4V339 395 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 CBWD3Q5JTY5 395 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 SPDYAQ5MJ70 313 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 CBWD5Q5RIA9 395 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 FAM43BQ6ZT52 329 aaPredicted RBP11.45□□□□□ -0.58
USP54-204ENST00000422491 FAM186BQ8IYM0 893 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 CFAP61Q8NHU2 1237 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 SLC20A1Q8WUM9 679 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 SPOCK2Q92563 424 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 ITFG2Q969R8 447 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 AGPAT1Q99943 283 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 VCXQ9H320 206 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 NINJ2Q9NZG7 142 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 RGL1Q9NZL6 768 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 APEX2Q9UBZ4 518 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 PHTF1Q9UMS5 762 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 LRCH1Q9Y2L9 728 aa11.45□□□□□ -0.58
USP54-204ENST00000422491 ZMYM2Q9UBW7 1377 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 DOT1LQ8TEK3 1739 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 CBX6O95503 412 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 FTLP02792 175 aaPredicted RBP11.44□□□□□ -0.58
USP54-204ENST00000422491 SPIRE1Q08AE8 756 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 DNAJC3Q13217 504 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 LAMB3Q13751 1172 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 MESDQ14696 234 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 ZNF449Q6P9G9 518 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 RNF207Q6ZRF8 634 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 RGS9BPQ6ZS82 235 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 CADPS2Q86UW7 1296 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 CPNE8Q86YQ8 564 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 FBXO41Q8TF61 875 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 TRAPPC9Q96Q05 1148 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 EPAS1Q99814 870 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 GORASP1Q9BQQ3 440 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 IKZF4Q9H2S9 585 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 DNAJC17Q9NVM6 304 aaKnown RBP11.44□□□□□ -0.58
USP54-204ENST00000422491 FAM47DPA6NHR8 397 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 THAP12O43422 761 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 MTA2O94776 668 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 GCNT3O95395 438 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 LMNAP02545 664 aaKnown RBP11.44□□□□□ -0.58
USP54-204ENST00000422491 PSMC2P35998 433 aaKnown RBP11.44□□□□□ -0.58
USP54-204ENST00000422491 SSR1P43307 286 aaKnown RBP11.44□□□□□ -0.58
USP54-204ENST00000422491 RASSF2P50749 326 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 ASPRV1Q53RT3 343 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 C10orf82Q8WW14 230 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms