RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 LRRC8DQ7L1W4 858 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 APBB1IPQ7Z5R6 666 aaPredicted RBP15.55■□□□□ 0.08
SF3B1-204ENST00000414963 FAM186BQ8IYM0 893 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 GPD1LQ8N335 351 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 ANKRD20A12PQ8NF67 263 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 TCHPQ9BT92 498 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 MSTO1Q9BUK6 570 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 AGO3Q9H9G7 860 aaKnown RBP15.55■□□□□ 0.08
SF3B1-204ENST00000414963 ERVK-5Q9HDB9 667 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 ARMCX3Q9UH62 379 aaPredicted RBP15.55■□□□□ 0.08
SF3B1-204ENST00000414963 TBX21Q9UL17 535 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 ST3GAL5Q9UNP4 418 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 OGTO15294 1046 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 AP5Z1O43299 807 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 PARNO95453 639 aaKnown RBP15.54■□□□□ 0.08
SF3B1-204ENST00000414963 MBTPS1Q14703 1052 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 NOLC1Q14978 699 aaKnown RBP eCLIP15.54■□□□□ 0.08
SF3B1-204ENST00000414963 KRT31Q15323 416 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 SNRNP35Q16560 246 aaKnown RBP15.54■□□□□ 0.08
SF3B1-204ENST00000414963 DCAF4L1Q3SXM0 396 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 ZNF568Q3ZCX4 644 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 HSP90AA4PQ58FG1 418 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 CEP135Q66GS9 1140 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 SLC27A1Q6PCB7 646 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 CRELD2Q6UXH1 353 aaPredicted RBP15.54■□□□□ 0.08
SF3B1-204ENST00000414963 TRIM59Q8IWR1 403 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 CPB2Q96IY4 423 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 MFSD14AQ96MC6 490 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 TRAIPQ9BWF2 469 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 CDT1Q9H211 546 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 ANKFY1Q9P2R3 1169 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 PADI3Q9ULW8 664 aa15.54■□□□□ 0.08
SF3B1-204ENST00000414963 DNAH12Q6ZR08 3092 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 ZNF233A6NK53 670 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 CLTBP09497 229 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 GHRP10912 638 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 PRKCSHP14314 528 aaPredicted RBP15.53■□□□□ 0.08
SF3B1-204ENST00000414963 PPP2R3AQ06190 1150 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 TMEM132AQ24JP5 1023 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 CCDC40Q4G0X9 1142 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 INTS8Q75QN2 995 aaKnown RBP15.53■□□□□ 0.08
SF3B1-204ENST00000414963 CBWD2Q8IUF1 395 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 ZSWIM2Q8NEG5 633 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 TMC2Q8TDI7 906 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 SAAL1Q96ER3 474 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 ADPGKQ9BRR6 497 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 FAM213AQ9BRX8 229 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 TUBGCP2Q9BSJ2 902 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 OSBPL7Q9BZF2 842 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 HIPK3Q9H422 1215 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 ATP11BQ9Y2G3 1177 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 BRCA2P51587 3418 aa15.53■□□□□ 0.08
SF3B1-204ENST00000414963 A0A1B0GTH6 734 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 GOLGA8IPA6NC78 632 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 GOLGA8JA6NMD2 632 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 KIAA0355O15063 1070 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 SERPINC1P01008 464 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 CLTAP09496 248 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 CD52P31358 61 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 MATR3P43243 847 aaKnown RBP eCLIP15.52■□□□□ 0.08
SF3B1-204ENST00000414963 MTIF2P46199 727 aaKnown RBP15.52■□□□□ 0.08
SF3B1-204ENST00000414963 COPB1P53618 953 aaKnown RBP15.52■□□□□ 0.08
SF3B1-204ENST00000414963 PAK2Q13177 524 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 DSC3Q14574 896 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 GPNMBQ14956 572 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 NR1I3Q14994 352 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 MAN2A1Q16706 1144 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 UBXN11Q5T124 520 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 ZBTB33Q86T24 672 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 NAP1L5Q96NT1 182 aaPredicted RBP15.52■□□□□ 0.08
SF3B1-204ENST00000414963 RTN4Q9NQC3 1192 aaKnown RBP15.52■□□□□ 0.08
SF3B1-204ENST00000414963 TMEM39AQ9NV64 488 aa15.52■□□□□ 0.08
SF3B1-204ENST00000414963 CPSF3Q9UKF6 684 aaKnown RBP15.52■□□□□ 0.08
SF3B1-204ENST00000414963 PIN4Q9Y237 131 aaKnown RBP15.52■□□□□ 0.08
SF3B1-204ENST00000414963 CBFA2T2O43439 604 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 ADRB2P07550 413 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 KRT13P13646 458 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 GRM5P41594 1212 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 ACOT2P49753 483 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 UBASH3AP57075 661 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 CLDN10P78369 228 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 CYP24A1Q07973 514 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 BFSP1Q12934 665 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 PSMD6Q15008 389 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 VWA3BQ502W6 1294 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 MIIPQ5JXC2 388 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 ZBTB41Q5SVQ8 909 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 CDR2LQ86X02 465 aaPredicted RBP15.51■□□□□ 0.07
SF3B1-204ENST00000414963 RDH13Q8NBN7 331 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 TMX1Q9H3N1 280 aa15.51■□□□□ 0.07
SF3B1-204ENST00000414963 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.51■□□□□ 0.07
SF3B1-204ENST00000414963 LGALS16A8MUM7 142 aa15.5■□□□□ 0.07
SF3B1-204ENST00000414963 NBNO60934 754 aa15.5■□□□□ 0.07
SF3B1-204ENST00000414963 CXCL10P02778 98 aa15.5■□□□□ 0.07
SF3B1-204ENST00000414963 TPM2P07951 284 aa15.5■□□□□ 0.07
SF3B1-204ENST00000414963 STAG3L1P0CL83 205 aa15.5■□□□□ 0.07
SF3B1-204ENST00000414963 ZSCAN20P17040 1043 aaPredicted RBP15.5■□□□□ 0.07
SF3B1-204ENST00000414963 RFC2P35250 354 aa15.5■□□□□ 0.07
SF3B1-204ENST00000414963 VAMP7P51809 220 aa15.5■□□□□ 0.07
SF3B1-204ENST00000414963 ZNF75DP51815 510 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms