RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 A0A0B4J269 797 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 PARNO95453 639 aaKnown RBP19.71■□□□□ 0.75
SDC1-203ENST00000403076 EPB41P11171 864 aaKnown RBP19.71■□□□□ 0.75
SDC1-203ENST00000403076 PSMC2P35998 433 aaKnown RBP19.71■□□□□ 0.75
SDC1-203ENST00000403076 MCL1Q07820 350 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 HSP90AA2PQ14568 343 aaPredicted RBP19.71■□□□□ 0.75
SDC1-203ENST00000403076 GSE1Q14687 1217 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 TWF2Q6IBS0 349 aaKnown RBP19.71■□□□□ 0.75
SDC1-203ENST00000403076 SLC27A1Q6PCB7 646 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 THNSL1Q8IYQ7 743 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 GPD1LQ8N335 351 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 TRIM6Q9C030 488 aaPredicted RBP19.71■□□□□ 0.75
SDC1-203ENST00000403076 HAPLN2Q9GZV7 340 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 CDT1Q9H211 546 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 PTPRHQ9HD43 1115 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 CHST12Q9NRB3 414 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 KIAA0355O15063 1070 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 OGTO15294 1046 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 NPTXRO95502 500 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 MCF2P10911 925 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 PROZP22891 400 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 CASP4P49662 377 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 DCAF4L1Q3SXM0 396 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 ZC3H3Q8IXZ2 948 aaKnown RBP19.71■□□□□ 0.75
SDC1-203ENST00000403076 ANKRD20A12PQ8NF67 263 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 CCDC51Q96ER9 411 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 FAM213AQ9BRX8 229 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 IFIH1Q9BYX4 1025 aaKnown RBP19.71■□□□□ 0.75
SDC1-203ENST00000403076 WNT8AQ9H1J5 351 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 KIAA1586Q9HCI6 787 aa19.71■□□□□ 0.75
SDC1-203ENST00000403076 TRIM43BA6NCK2 446 aa19.7■□□□□ 0.74
SDC1-203ENST00000403076 RBAK-RBAKDNI3L0D1 243 aa19.7■□□□□ 0.74
SDC1-203ENST00000403076 ABLIM1O14639 778 aa19.7■□□□□ 0.74
SDC1-203ENST00000403076 EXTL3O43909 919 aa19.7■□□□□ 0.74
SDC1-203ENST00000403076 NBNO60934 754 aa19.7■□□□□ 0.74
SDC1-203ENST00000403076 AKAP3O75969 853 aa19.7■□□□□ 0.74
SDC1-203ENST00000403076 GNA14O95837 355 aa19.7■□□□□ 0.74
SDC1-203ENST00000403076 TIMP1P01033 207 aa19.7■□□□□ 0.74
SDC1-203ENST00000403076 PLCB2Q00722 1185 aa19.7■□□□□ 0.74
SDC1-203ENST00000403076 FAM186BQ8IYM0 893 aa19.7■□□□□ 0.74
SDC1-203ENST00000403076 ZSWIM2Q8NEG5 633 aa19.7■□□□□ 0.74
SDC1-203ENST00000403076 SEPT8Q92599 483 aa19.7■□□□□ 0.74
SDC1-203ENST00000403076 TRIM43Q96BQ3 446 aaPredicted RBP19.7■□□□□ 0.74
SDC1-203ENST00000403076 CNOT6LQ96LI5 555 aaKnown RBP19.7■□□□□ 0.74
SDC1-203ENST00000403076 KCNJ18B7U540 433 aa19.69■□□□□ 0.74
SDC1-203ENST00000403076 SLC16A3O15427 465 aaKnown RBP19.69■□□□□ 0.74
SDC1-203ENST00000403076 MTIF2P46199 727 aaKnown RBP19.69■□□□□ 0.74
SDC1-203ENST00000403076 ACOT2P49753 483 aa19.69■□□□□ 0.74
SDC1-203ENST00000403076 OSTNP61366 133 aa19.69■□□□□ 0.74
SDC1-203ENST00000403076 SPAG1Q07617 926 aa19.69■□□□□ 0.74
SDC1-203ENST00000403076 KCNJ12Q14500 433 aa19.69■□□□□ 0.74
SDC1-203ENST00000403076 SEZ6Q53EL9 994 aa19.69■□□□□ 0.74
SDC1-203ENST00000403076 CDKAL1Q5VV42 579 aa19.69■□□□□ 0.74
SDC1-203ENST00000403076 DEFB128Q7Z7B8 93 aa19.69■□□□□ 0.74
SDC1-203ENST00000403076 IRF2BP1Q8IU81 584 aa19.69■□□□□ 0.74
SDC1-203ENST00000403076 C7orf61Q8IZ16 206 aa19.69■□□□□ 0.74
SDC1-203ENST00000403076 TMEM174Q8WUU8 243 aa19.69■□□□□ 0.74
SDC1-203ENST00000403076 MKNK1Q9BUB5 465 aa19.69■□□□□ 0.74
SDC1-203ENST00000403076 ZNF233A6NK53 670 aa19.68■□□□□ 0.74
SDC1-203ENST00000403076 KRT13P13646 458 aa19.68■□□□□ 0.74
SDC1-203ENST00000403076 SNRNP35Q16560 246 aaKnown RBP19.68■□□□□ 0.74
SDC1-203ENST00000403076 UVSSAQ2YD98 709 aa19.68■□□□□ 0.74
SDC1-203ENST00000403076 CBWD2Q8IUF1 395 aa19.68■□□□□ 0.74
SDC1-203ENST00000403076 DBF4BQ8NFT6 615 aa19.68■□□□□ 0.74
SDC1-203ENST00000403076 ADAM2Q99965 735 aa19.68■□□□□ 0.74
SDC1-203ENST00000403076 EIF2AQ9BY44 585 aaKnown RBP19.68■□□□□ 0.74
SDC1-203ENST00000403076 HSD3B7Q9H2F3 369 aa19.68■□□□□ 0.74
SDC1-203ENST00000403076 METTL14Q9HCE5 456 aaKnown RBP19.68■□□□□ 0.74
SDC1-203ENST00000403076 ARMCX3Q9UH62 379 aaPredicted RBP19.68■□□□□ 0.74
SDC1-203ENST00000403076 EVI5O60447 810 aa19.67■□□□□ 0.74
SDC1-203ENST00000403076 ATP1A3P13637 1013 aa19.67■□□□□ 0.74
SDC1-203ENST00000403076 ZNF18P17022 549 aa19.67■□□□□ 0.74
SDC1-203ENST00000403076 IBSPP21815 317 aaPredicted RBP19.67■□□□□ 0.74
SDC1-203ENST00000403076 EEF1GP26641 437 aaKnown RBP19.67■□□□□ 0.74
SDC1-203ENST00000403076 RFC2P35250 354 aa19.67■□□□□ 0.74
SDC1-203ENST00000403076 KYAT1Q16773 422 aa19.67■□□□□ 0.74
SDC1-203ENST00000403076 PLEKHG4Q58EX7 1191 aa19.67■□□□□ 0.74
SDC1-203ENST00000403076 TCP11X2Q5H9J9 407 aa19.67■□□□□ 0.74
SDC1-203ENST00000403076 FRMD5Q7Z6J6 570 aa19.67■□□□□ 0.74
SDC1-203ENST00000403076 TMEM199Q8N511 208 aa19.67■□□□□ 0.74
SDC1-203ENST00000403076 CCDC94Q9BW85 323 aaPredicted RBP19.67■□□□□ 0.74
SDC1-203ENST00000403076 FTHL17Q9BXU8 183 aa19.67■□□□□ 0.74
SDC1-203ENST00000403076 TMX1Q9H3N1 280 aa19.67■□□□□ 0.74
SDC1-203ENST00000403076 MAPK13O15264 365 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 SERPINC1P01008 464 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 TPM2P07951 284 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 CLTAP09496 248 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 STAG3L1P0CL83 205 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 GPNMBQ14956 572 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 ZBTB41Q5SVQ8 909 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 UBXN11Q5T124 520 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 CEP120Q8N960 986 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 DPF3Q92784 378 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 APBB2Q92870 758 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 FBXL18Q96ME1 805 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 APOL6Q9BWW8 343 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 PES1O00541 588 aaKnown RBP19.66■□□□□ 0.74
SDC1-203ENST00000403076 ADRB2P07550 413 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 PRKCSHP14314 528 aaPredicted RBP19.66■□□□□ 0.74
SDC1-203ENST00000403076 ITGB8P26012 769 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms