RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 LRRC10BA6NIK2 292 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 CLDN3O15551 220 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 ABL1P00519 1130 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 CXCL8P10145 99 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 CCL5P13501 91 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 TRIM21P19474 475 aaKnown RBP12.73□□□□□ -0.37
SKA3-203ENST00000400018 EEF1GP26641 437 aaKnown RBP12.73□□□□□ -0.37
SKA3-203ENST00000400018 PSMC2P35998 433 aaKnown RBP12.73□□□□□ -0.37
SKA3-203ENST00000400018 PTGISQ16647 500 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 AMHR2Q16671 573 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 EDRF1Q3B7T1 1238 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 ZNF568Q3ZCX4 644 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 FILIP1LQ4L180 1135 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 BRDTQ58F21 947 aaPredicted RBP12.73□□□□□ -0.37
SKA3-203ENST00000400018 LRRC8AQ8IWT6 810 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 SEMA4DQ92854 862 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 ACO2Q99798 780 aaKnown RBP12.73□□□□□ -0.37
SKA3-203ENST00000400018 A0A1W2PQ45 241 aaPredicted RBP12.73□□□□□ -0.37
SKA3-203ENST00000400018 A0A1W2PQY0 241 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 LRRIQ3A6PVS8 624 aaPredicted RBP12.73□□□□□ -0.37
SKA3-203ENST00000400018 ZNF500O60304 480 aaPredicted RBP12.73□□□□□ -0.37
SKA3-203ENST00000400018 B4GALT4O60513 344 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 GHRP10912 638 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 POLR2FP61218 127 aaKnown RBP12.73□□□□□ -0.37
SKA3-203ENST00000400018 DHX38Q92620 1227 aaKnown RBP12.73□□□□□ -0.37
SKA3-203ENST00000400018 ADAMTS10Q9H324 1103 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 TMEM206Q9H813 350 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 AGO3Q9H9G7 860 aaKnown RBP12.73□□□□□ -0.37
SKA3-203ENST00000400018 GTF2IRD1Q9UHL9 959 aa12.73□□□□□ -0.37
SKA3-203ENST00000400018 REV3LO60673 3130 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 TET1Q8NFU7 2136 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 PQBP1O60828 265 aaKnown RBP12.72□□□□□ -0.37
SKA3-203ENST00000400018 NOL4O94818 638 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 CHRNA1P02708 482 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 TMOD1P28289 359 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 BFSP1Q12934 665 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 ATF7IP2Q5U623 682 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 RNF169Q8NCN4 708 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 ANKRD20A12PQ8NF67 263 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 NOC2LQ9Y3T9 749 aaKnown RBP12.72□□□□□ -0.37
SKA3-203ENST00000400018 CDY2AQ9Y6F7 541 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 TRIP11Q15643 1979 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 HSPA8P11142 646 aaKnown RBP12.72□□□□□ -0.37
SKA3-203ENST00000400018 VAMP7P51809 220 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 CCZ1BP86790 482 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 CCZ1P86791 482 aaPredicted RBP12.72□□□□□ -0.37
SKA3-203ENST00000400018 RAPGEF1Q13905 1077 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 MXD4Q14582 209 aaPredicted RBP12.72□□□□□ -0.37
SKA3-203ENST00000400018 ARHGAP44Q17R89 818 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 STXBP4Q6ZWJ1 553 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 CATSPER4Q7RTX7 472 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 ZBTB8OSQ8IWT0 167 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 REM2Q8IYK8 340 aaPredicted RBP12.72□□□□□ -0.37
SKA3-203ENST00000400018 TCP11Q8WWU5 503 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 LPPQ93052 612 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 NXF3Q9H4D5 531 aaKnown RBP12.72□□□□□ -0.37
SKA3-203ENST00000400018 GCNT4Q9P109 453 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 PIN4Q9Y237 131 aaKnown RBP12.72□□□□□ -0.37
SKA3-203ENST00000400018 NOD1Q9Y239 953 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 SIK3Q9Y2K2 1263 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 FHOD1Q9Y613 1164 aa12.72□□□□□ -0.37
SKA3-203ENST00000400018 SCN10AQ9Y5Y9 1956 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 ABLIM1O14639 778 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 CBFA2T2O43439 604 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 TSPAN1O60635 241 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 NPTXRO95502 500 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 TNNI1P19237 187 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 HOXA11P31270 313 aaPredicted RBP12.71□□□□□ -0.37
SKA3-203ENST00000400018 KRT9P35527 623 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 DNTTIP2Q5QJE6 756 aaKnown RBP12.71□□□□□ -0.37
SKA3-203ENST00000400018 RNF180Q86T96 592 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 KCTD17Q8N5Z5 321 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 TAS1R2Q8TE23 839 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 PXYLP1Q8TE99 480 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 CDT1Q9H211 546 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 STARD7Q9NQZ5 370 aa12.71□□□□□ -0.37
SKA3-203ENST00000400018 MBLAC1A4D2B0 266 aaPredicted RBP12.71□□□□□ -0.38
SKA3-203ENST00000400018 RPL13P26373 211 aaKnown RBP12.71□□□□□ -0.38
SKA3-203ENST00000400018 TBX2Q13207 712 aaPredicted RBP12.71□□□□□ -0.38
SKA3-203ENST00000400018 SNX17Q15036 470 aa12.71□□□□□ -0.38
SKA3-203ENST00000400018 PPP2R5AQ15172 486 aa12.71□□□□□ -0.38
SKA3-203ENST00000400018 CDCA2Q69YH5 1023 aaPredicted RBP12.71□□□□□ -0.38
SKA3-203ENST00000400018 ARHGEF19Q8IW93 802 aa12.71□□□□□ -0.38
SKA3-203ENST00000400018 SLAIN1Q8ND83 568 aa12.71□□□□□ -0.38
SKA3-203ENST00000400018 CEP63Q96MT8 703 aa12.71□□□□□ -0.38
SKA3-203ENST00000400018 TMEM117Q9H0C3 514 aa12.71□□□□□ -0.38
SKA3-203ENST00000400018 PDZD7Q9H5P4 517 aa12.71□□□□□ -0.38
SKA3-203ENST00000400018 SNTG2Q9NY99 539 aa12.71□□□□□ -0.38
SKA3-203ENST00000400018 RBAKQ9NYW8 714 aaPredicted RBP12.71□□□□□ -0.38
SKA3-203ENST00000400018 A0A0B4J269 797 aa12.7□□□□□ -0.38
SKA3-203ENST00000400018 ERLIN2O94905 339 aa12.7□□□□□ -0.38
SKA3-203ENST00000400018 CST3P01034 146 aaPredicted RBP12.7□□□□□ -0.38
SKA3-203ENST00000400018 AFPP02771 609 aaKnown RBP12.7□□□□□ -0.38
SKA3-203ENST00000400018 ORC1Q13415 861 aa12.7□□□□□ -0.38
SKA3-203ENST00000400018 ZNF618Q5T7W0 954 aa12.7□□□□□ -0.38
SKA3-203ENST00000400018 TOGARAM2Q6ZUX3 1019 aa12.7□□□□□ -0.38
SKA3-203ENST00000400018 ZC3H3Q8IXZ2 948 aaKnown RBP12.7□□□□□ -0.38
SKA3-203ENST00000400018 GPD1LQ8N335 351 aa12.7□□□□□ -0.38
SKA3-203ENST00000400018 TATDN2Q93075 761 aa12.7□□□□□ -0.38
SKA3-203ENST00000400018 SCLYQ96I15 445 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms