RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 DDX53Q86TM3 631 aaKnown RBP16.02■□□□□ 0.15
SEC13-208ENST00000397109 ZNF280BQ86YH2 543 aa16.02■□□□□ 0.15
SEC13-208ENST00000397109 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.02■□□□□ 0.15
SEC13-208ENST00000397109 SPIRE2Q8WWL2 714 aa16.02■□□□□ 0.15
SEC13-208ENST00000397109 ARHGAP28Q9P2N2 729 aa16.02■□□□□ 0.15
SEC13-208ENST00000397109 DNAJB4Q9UDY4 337 aa16.02■□□□□ 0.15
SEC13-208ENST00000397109 PARP2Q9UGN5 583 aa16.02■□□□□ 0.15
SEC13-208ENST00000397109 FAN1Q9Y2M0 1017 aa16.02■□□□□ 0.15
SEC13-208ENST00000397109 MYH11P35749 1972 aa16.02■□□□□ 0.15
SEC13-208ENST00000397109 TTLL13PA6NNM8 815 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 H3BQ06 376 aaPredicted RBP16.01■□□□□ 0.15
SEC13-208ENST00000397109 NR1I2O75469 434 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 PLS3P13797 630 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 PLCG1P19174 1290 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 GTF2F1P35269 517 aaKnown RBP eCLIP16.01■□□□□ 0.15
SEC13-208ENST00000397109 TXLNAP40222 546 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 AFF1P51825 1210 aaKnown RBP16.01■□□□□ 0.15
SEC13-208ENST00000397109 CEBPZQ03701 1054 aaKnown RBP16.01■□□□□ 0.15
SEC13-208ENST00000397109 SMC1AQ14683 1233 aaKnown RBP16.01■□□□□ 0.15
SEC13-208ENST00000397109 SLC39A14Q15043 492 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 KARSQ15046 597 aaKnown RBP16.01■□□□□ 0.15
SEC13-208ENST00000397109 DUSP6Q16828 381 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 KLHL40Q2TBA0 621 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 ATF7IP2Q5U623 682 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 FOXD4L5Q5VV16 416 aaPredicted RBP16.01■□□□□ 0.15
SEC13-208ENST00000397109 RBM23Q86U06 439 aaKnown RBP16.01■□□□□ 0.15
SEC13-208ENST00000397109 FOXD4L4Q8WXT5 416 aaPredicted RBP16.01■□□□□ 0.15
SEC13-208ENST00000397109 ZNF396Q96N95 335 aaPredicted RBP16.01■□□□□ 0.15
SEC13-208ENST00000397109 USP28Q96RU2 1077 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 RPS6KC1Q96S38 1066 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 MRPL4Q9BYD3 311 aaKnown RBP16.01■□□□□ 0.15
SEC13-208ENST00000397109 LARSQ9P2J5 1176 aaKnown RBP16.01■□□□□ 0.15
SEC13-208ENST00000397109 CCDC39Q9UFE4 941 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 FBXO2Q9UK22 296 aaPredicted RBP16.01■□□□□ 0.15
SEC13-208ENST00000397109 ODF2LQ9ULJ1 636 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 PCDHGC5Q9Y5F6 944 aa16.01■□□□□ 0.15
SEC13-208ENST00000397109 SFI1A8K8P3 1242 aa16■□□□□ 0.15
SEC13-208ENST00000397109 H0YCG3 227 aa16■□□□□ 0.15
SEC13-208ENST00000397109 AKAP5P24588 427 aa16■□□□□ 0.15
SEC13-208ENST00000397109 LTBRP36941 435 aa16■□□□□ 0.15
SEC13-208ENST00000397109 NASPP49321 788 aaPredicted RBP16■□□□□ 0.15
SEC13-208ENST00000397109 NDUFV1P49821 464 aa16■□□□□ 0.15
SEC13-208ENST00000397109 SCNN1GP51170 649 aa16■□□□□ 0.15
SEC13-208ENST00000397109 RAD51AP2Q09MP3 1159 aa16■□□□□ 0.15
SEC13-208ENST00000397109 GIT2Q14161 759 aa16■□□□□ 0.15
SEC13-208ENST00000397109 ARSHQ5FYA8 562 aa16■□□□□ 0.15
SEC13-208ENST00000397109 NT5DC1Q5TFE4 455 aa16■□□□□ 0.15
SEC13-208ENST00000397109 PTCRAQ6ISU1 281 aaPredicted RBP16■□□□□ 0.15
SEC13-208ENST00000397109 GPBP1Q86WP2 473 aa16■□□□□ 0.15
SEC13-208ENST00000397109 VPS52Q8N1B4 723 aa16■□□□□ 0.15
SEC13-208ENST00000397109 MRPL43Q8N983 215 aaKnown RBP16■□□□□ 0.15
SEC13-208ENST00000397109 RAD54LQ92698 747 aa16■□□□□ 0.15
SEC13-208ENST00000397109 ZFP42Q96MM3 310 aa16■□□□□ 0.15
SEC13-208ENST00000397109 BLOC1S4Q9NUP1 217 aa16■□□□□ 0.15
SEC13-208ENST00000397109 TNFSF13BQ9Y275 285 aa16■□□□□ 0.15
SEC13-208ENST00000397109 GRXCR2A6NFK2 248 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 NRP1O14786 923 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 SLC16A4O15374 487 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 CXCL14O95715 111 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 SRGAP2BP0DMP2 458 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 SCP2P22307 547 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 DSC1Q08554 894 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 GRIK3Q13003 919 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 STRN3Q13033 797 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 EEF1DP3Q658K8 133 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 COLGALT2Q8IYK4 626 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 KRI1Q8N9T8 703 aaKnown RBP15.99■□□□□ 0.15
SEC13-208ENST00000397109 LARP4BQ92615 738 aaKnown RBP15.99■□□□□ 0.15
SEC13-208ENST00000397109 EPSTI1Q96J88 318 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 ACO2Q99798 780 aaKnown RBP15.99■□□□□ 0.15
SEC13-208ENST00000397109 MIOSQ9NXC5 875 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 STK17AQ9UEE5 414 aa15.99■□□□□ 0.15
SEC13-208ENST00000397109 TDRD15B5MCY1 1934 aaKnown RBP15.99■□□□□ 0.15
SEC13-208ENST00000397109 TNFRSF10AO00220 468 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 PER2O15055 1255 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 LINC01565O15544 149 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 B4GALT3O60512 393 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 EDN1P05305 212 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 KRT18P05783 430 aaKnown RBP15.98■□□□□ 0.15
SEC13-208ENST00000397109 CTSAP10619 480 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 OR1G1P47890 313 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 DHX8Q14562 1220 aaKnown RBP15.98■□□□□ 0.15
SEC13-208ENST00000397109 MCM6Q14566 821 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 STK38Q15208 465 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 TMEM173Q86WV6 379 aaPredicted RBP15.98■□□□□ 0.15
SEC13-208ENST00000397109 TMEM87AQ8NBN3 555 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 GSTCDQ8NEC7 633 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 COLEC11Q9BWP8 271 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 ZBP1Q9H171 429 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 LMBRD1Q9NUN5 540 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 SNTG2Q9NY99 539 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 KLK14Q9P0G3 267 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 CD207Q9UJ71 328 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 CFAP45Q9UL16 551 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 USP20Q9Y2K6 914 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 IRAK3Q9Y616 596 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 VCANP13611 3396 aa15.98■□□□□ 0.15
SEC13-208ENST00000397109 NPHP3-ACAD11A0A0J9YXS1 232 aa15.97■□□□□ 0.15
SEC13-208ENST00000397109 C2orf71A6NGG8 1288 aa15.97■□□□□ 0.15
SEC13-208ENST00000397109 HIDE1A8MVS5 230 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms