RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 GNA15P30679 374 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 SERPINB10P48595 397 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 BCAR1P56945 870 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 RAB14P61106 215 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 SLC18A3Q16572 532 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 RARS2Q5T160 578 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 RCSD1Q6JBY9 416 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 RWDD4Q6NW29 188 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 CDC26Q8NHZ8 85 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 TTC8Q8TAM2 541 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 ZNF473Q8WTR7 871 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 ASCC2Q9H1I8 757 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 EIF4E1BA6NMX2 242 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 QARSP47897 775 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 ROR1Q01973 937 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 ANKRD40Q6AI12 368 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 CCNI2Q6ZMN8 369 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 CATSPER1Q8NEC5 780 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 RFWD2Q8NHY2 731 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 TOPORSQ9NS56 1045 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 SLC9A2Q9UBY0 812 aa10.86□□□□□ -0.67
LIMCH1-203ENST00000396595 PDXKO00764 312 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 ZNF189O75820 626 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 SLC1A1P43005 524 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 USP11P51784 963 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 SNAP25P60880 206 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 KRT17Q04695 432 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 MAPRE2Q15555 327 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 KIAA1755Q5JYT7 1200 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 HEATR6Q6AI08 1181 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 CCNYL1Q8N7R7 359 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 GIMAP8Q8ND71 665 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 ATL2Q8NHH9 583 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 CCT8L2Q96SF2 557 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 CPVLQ9H3G5 476 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 TMEM260Q9NX78 707 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 PSD3Q9NYI0 1048 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 STAP1Q9ULZ2 295 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 INPP5FQ9Y2H2 1132 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 PALLDQ8WX93 1383 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 TMEM191CA6NGB0 347 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 NFKBIAP25963 317 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 OLFML1Q6UWY5 402 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 HORMAD1Q86X24 394 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 PARD3BQ8TEW8 1205 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 CEP95Q96GE4 821 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 DACH2Q96NX9 599 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 RMDN3Q96TC7 470 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 NDEL1Q9GZM8 345 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 PARVBQ9HBI1 364 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 ADA2Q9NZK5 511 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 PNPLA7Q6ZV29 1317 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 MED14O60244 1454 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 USP17L10C9JJH3 530 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 ZBTB22O15209 634 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 TPP2P29144 1249 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 IFNA8P32881 189 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 CEP78Q5JTW2 689 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 EEPD1Q7L9B9 569 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 CATSPER4Q7RTX7 472 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 AGPAT1Q99943 283 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 FSD1LQ9BXM9 530 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 ZNF341Q9BYN7 854 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 IRX2Q9BZI1 471 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 TRIM9Q9C026 710 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 ABCB11O95342 1321 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 CCDC195A0A1B0GUA6 201 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 SNX2O60749 519 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 CAPN1P07384 714 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 FCER1AP12319 257 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 PDIA5Q14554 519 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 AGBL2Q5U5Z8 902 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 ADSSL1Q8N142 457 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 AGGF1Q8N302 714 aaeCLIP10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 C1orf54Q8WWF1 131 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 CHP1Q99653 195 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 KIF9Q9HAQ2 790 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 TUBE1Q9UJT0 475 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 USP42Q9H9J4 1324 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 ADCY3O60266 1144 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 CDH16O75309 829 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 NDUFAF2Q8N183 169 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 SLC26A7Q8TE54 656 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 THAP11Q96EK4 314 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 TRABDQ9H4I3 376 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 ZFYVE1Q9HBF4 777 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 PCSK1NQ9UHG2 260 aa10.85□□□□□ -0.67
LIMCH1-203ENST00000396595 LAMC1P11047 1609 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 EMSYQ7Z589 1322 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 TMEM247A6NEH6 219 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 TCP11X1B4DZS4 312 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 SLC16A3O15427 465 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 NMT2O60551 498 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 RTN2O75298 545 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 NPR1P16066 1061 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 PHKA2P46019 1235 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 AARSP49588 968 aaKnown RBP eCLIP10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 STX3Q13277 289 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 HLFQ16534 295 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 ZNF568Q3ZCX4 644 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms