RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 CEP128Q6ZU80 1094 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 MIGA2Q7L4E1 593 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 SH3BP5LQ7L8J4 393 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 NIPA1Q7RTP0 329 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 XXYLT1Q8NBI6 393 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 ZNF564Q8TBZ8 553 aaPredicted RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 EPS8L1Q8TE68 723 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 GRK7Q8WTQ7 553 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 SLC20A1Q8WUM9 679 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 SHC3Q92529 594 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 FAM81BQ96LP2 452 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 PRMT1Q99873 361 aaKnown RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 ZNF577Q9BSK1 485 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 MOV10L1Q9BXT6 1211 aaKnown RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 SERPINA10Q9UK55 444 aa10.73□□□□□ -0.69
COL17A1-203ENST00000393211 USP15Q9Y4E8 981 aaPredicted RBP10.73□□□□□ -0.69
COL17A1-203ENST00000393211 K7ENM7 598 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 BACH1O14867 736 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 SPOPO43791 374 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 LRRN2O75325 713 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 SUN1O94901 812 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 LYPLA2O95372 231 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 RARAP10276 462 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 CHRNB2P17787 502 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 SNAP25P60880 206 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 ZNF268Q14587 947 aaPredicted RBP10.72□□□□□ -0.69
COL17A1-203ENST00000393211 RASA3Q14644 834 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 PPP1R7Q15435 360 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 HIBCHQ6NVY1 386 aaPredicted RBP10.72□□□□□ -0.69
COL17A1-203ENST00000393211 RHBDF2Q6PJF5 856 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 PADI6Q6TGC4 694 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 RNF207Q6ZRF8 634 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 ARHGEF19Q8IW93 802 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 ZDHHC14Q8IZN3 488 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 DAW1Q8N136 415 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 GPATCH11Q8N954 259 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 BBOF1Q8ND07 529 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 EPS8L3Q8TE67 593 aaKnown RBP10.72□□□□□ -0.69
COL17A1-203ENST00000393211 CHURC1Q8WUH1 139 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 KIFAP3Q92845 792 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 GRAMD1AQ96CP6 724 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 PCDHB18PQ96TA0 734 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 ELAC2Q9BQ52 826 aaKnown RBP10.72□□□□□ -0.69
COL17A1-203ENST00000393211 LXNQ9BS40 222 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 FOXP3Q9BZS1 431 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 IKZF4Q9H2S9 585 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 UNC45AQ9H3U1 944 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 VEZTQ9HBM0 779 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 ARHGEF10LQ9HCE6 1279 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 LRRC4BQ9NT99 713 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 COQ4Q9Y3A0 265 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 ACTL7BQ9Y614 415 aa10.72□□□□□ -0.69
COL17A1-203ENST00000393211 ANKRD31Q8N7Z5 1873 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 LOC102724159A0A0B4J2E5 919 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 CHMP2AO43633 222 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 P4HBP07237 508 aaKnown RBP10.71□□□□□ -0.69
COL17A1-203ENST00000393211 ALADP13716 330 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 PLS3P13797 630 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 KCNA4P22459 653 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 HSPA1LP34931 641 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 SLC1A1P43005 524 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 MARCKSL1P49006 195 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 MXI1P50539 228 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 GTF2BQ00403 316 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 CDR2Q01850 454 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 PPP3CAQ08209 521 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 TCP10Q12799 353 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 PTK6Q13882 451 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 TNIP1Q15025 636 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 PWP2Q15269 919 aaKnown RBP10.71□□□□□ -0.69
COL17A1-203ENST00000393211 DOK7Q18PE1 504 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 GALNTL6Q49A17 601 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 C1orf220Q5T0J3 134 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.71□□□□□ -0.69
COL17A1-203ENST00000393211 EXOC3L1Q86VI1 746 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 RELL1Q8IUW5 271 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 KSR1Q8IVT5 923 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 PSPC1Q8WXF1 523 aaKnown RBP10.71□□□□□ -0.69
COL17A1-203ENST00000393211 SNF8Q96H20 258 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 IFT74Q96LB3 600 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 SCLT1Q96NL6 688 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 NUP85Q9BW27 656 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 RANBP17Q9H2T7 1088 aaKnown RBP10.71□□□□□ -0.69
COL17A1-203ENST00000393211 NOD2Q9HC29 1040 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 LGALS13Q9UHV8 139 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 HERC5Q9UII4 1024 aaKnown RBP10.71□□□□□ -0.69
COL17A1-203ENST00000393211 EXOC7Q9UPT5 735 aa10.71□□□□□ -0.69
COL17A1-203ENST00000393211 TMEM110-MUSTN1A8MSY1 372 aa10.7□□□□□ -0.7
COL17A1-203ENST00000393211 IPO5O00410 1097 aaKnown RBP10.7□□□□□ -0.7
COL17A1-203ENST00000393211 ZBTB39O15060 712 aa10.7□□□□□ -0.7
COL17A1-203ENST00000393211 SORBS3O60504 671 aa10.7□□□□□ -0.7
COL17A1-203ENST00000393211 GJB6O95452 261 aa10.7□□□□□ -0.7
COL17A1-203ENST00000393211 SGPL1O95470 568 aa10.7□□□□□ -0.7
COL17A1-203ENST00000393211 TTC4O95801 387 aa10.7□□□□□ -0.7
COL17A1-203ENST00000393211 GAS8O95995 478 aa10.7□□□□□ -0.7
COL17A1-203ENST00000393211 CFBP00751 764 aa10.7□□□□□ -0.7
COL17A1-203ENST00000393211 MYBL1P10243 752 aa10.7□□□□□ -0.7
COL17A1-203ENST00000393211 FGFR4P22455 802 aa10.7□□□□□ -0.7
COL17A1-203ENST00000393211 GTF2H1P32780 548 aa10.7□□□□□ -0.7
COL17A1-203ENST00000393211 SKIV2L2P42285 1042 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms