RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ABCG4Q9H172 646 aa4.9□□□□□ -1.62
SCN1A-202ENST00000375405 COPS7BQ9H9Q2 264 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 NXF1Q9UBU9 619 aaKnown RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 THRAP3Q9Y2W1 955 aaKnown RBP4.9□□□□□ -1.62
SCN1A-202ENST00000375405 CCDC85CA6NKD9 419 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 ACADLP28330 430 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 MZF1P28698 734 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-202ENST00000375405 LLGL1Q15334 1064 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF699Q32M78 642 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 C9orf131Q5VYM1 1079 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 HSDL2Q6YN16 418 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 SRFBP1Q8NEF9 429 aaKnown RBP4.9□□□□□ -1.63
SCN1A-202ENST00000375405 GIPC3Q8TF64 312 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 HDHD2Q9H0R4 259 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 PSD3Q9NYI0 1048 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 TSKSQ9UJT2 592 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 MGAT4AQ9UM21 535 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 BAZ1AQ9NRL2 1556 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-202ENST00000375405 E9PBE3 544 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 FKBP9O95302 570 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 BCAR1P56945 870 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 VAC14Q08AM6 782 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 TBC1D8BQ0IIM8 1120 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 ELF2Q15723 593 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 CALCRLQ16602 461 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF618Q5T7W0 954 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 FAM45BPQ6NSW5 357 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 FKBP9P1Q75LS8 142 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 WDR36Q8NI36 951 aaKnown RBP4.9□□□□□ -1.63
SCN1A-202ENST00000375405 CKAP2Q8WWK9 683 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 RFT1Q96AA3 541 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 MASTLQ96GX5 879 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 STK33Q9BYT3 514 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 SLC35C2Q9NQQ7 365 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 DDX19AQ9NUU7 478 aaKnown RBP4.9□□□□□ -1.63
SCN1A-202ENST00000375405 SLC9A8Q9Y2E8 581 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 IFT52Q9Y366 437 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 TTC41PQ6P2S7 1318 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 SLC33A1O00400 549 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-202ENST00000375405 ATF4P18848 351 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-202ENST00000375405 PDIA3P30101 505 aaKnown RBP4.9□□□□□ -1.63
SCN1A-202ENST00000375405 SERPINB10P48595 397 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 CACNB3P54284 484 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 PSME3P61289 254 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 HDLBPQ00341 1268 aaKnown RBP4.9□□□□□ -1.63
SCN1A-202ENST00000375405 TFDP1Q14186 410 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 CRYMQ14894 314 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 TTC39BQ5VTQ0 682 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF544Q6NX49 715 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 TTC6Q86TZ1 520 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 NUP93Q8N1F7 819 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 KLHL29Q96CT2 875 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 TMX3Q96JJ7 454 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 MCCC2Q9HCC0 563 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 OGFRQ9NZT2 677 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 GPN3Q9UHW5 284 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-202ENST00000375405 MAGED1Q9Y5V3 778 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-202ENST00000375405 MROH2BQ7Z745 1585 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 ERBINQ96RT1 1412 aa4.9□□□□□ -1.63
SCN1A-202ENST00000375405 ASB14A6NK59 587 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 BTBD19C9JJ37 291 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SMIM22K7EJ46 135 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 PPP2R1BP30154 601 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ORC2Q13416 577 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 TAF1BQ53T94 588 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 CDR2LQ86X02 465 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 CYP4X1Q8N118 509 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 PPM1KQ8N3J5 372 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 MPP5Q8N3R9 675 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF527Q8NB42 609 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SLC10A4Q96EP9 437 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 EXOC2Q96KP1 924 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 DPH5Q9H2P9 285 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SEMA3GQ9NS98 782 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ELP1O95163 1332 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ACEP12821 1306 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SNPHO15079 494 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SUN1O94901 812 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 OR6A2O95222 327 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 MYBL2P10244 700 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 POU1F1P28069 291 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 TWF2Q6IBS0 349 aaKnown RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ALKBH5Q6P6C2 394 aaKnown RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ABRAXAS1Q6UWZ7 409 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 HEATR4Q86WZ0 1026 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 EFHBQ8N7U6 833 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 GPR101Q96P66 508 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 XPO4Q9C0E2 1151 aaKnown RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 OSGEPL1Q9H4B0 414 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ENTPD7Q9NQZ7 604 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 TYW1Q9NV66 732 aaKnown RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 MTMR4Q9NYA4 1195 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 TRPM5Q9NZQ8 1165 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 CCDC151A5D8V7 595 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 CLIC2O15247 247 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 GABBR2O75899 941 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF806P0C7X5 589 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ALOX15P16050 662 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 CLCN1P35523 988 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 PSMC5P62195 406 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms