RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 TCP11X1B4DZS4 312 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 TGFB1I1O43294 461 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 RIPK2O43353 540 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 SNX3O60493 162 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 CHRNA3P32297 505 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 PTGIRP43119 386 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 COG2Q14746 738 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 PPP2R5AQ15172 486 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 LONRF1Q17RB8 773 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 CBWD6Q4V339 395 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 CBWD3Q5JTY5 395 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 CBWD5Q5RIA9 395 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 GPATCH4Q5T3I0 446 aaKnown RBP11.92□□□□□ -0.5
CCDC40-203ENST00000374877 TTC27Q6P3X3 843 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 MYCT1Q8N699 235 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 ANKRD42Q8N9B4 389 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 GMCL1P1Q8NEA9 526 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 TRPM4Q8TD43 1214 aa11.92□□□□□ -0.5
CCDC40-203ENST00000374877 PRCCQ92733 491 aaPredicted RBP11.92□□□□□ -0.5
CCDC40-203ENST00000374877 TRIM6Q9C030 488 aaPredicted RBP11.92□□□□□ -0.5
CCDC40-203ENST00000374877 ANKRD62A6NC57 917 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 IGF2BP3O00425 579 aaKnown RBP eCLIP11.91□□□□□ -0.5
CCDC40-203ENST00000374877 FAM13AO94988 1023 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 EEF2P13639 858 aaKnown RBP11.91□□□□□ -0.5
CCDC40-203ENST00000374877 NQO1P15559 274 aaKnown RBP11.91□□□□□ -0.5
CCDC40-203ENST00000374877 KCNJ1P48048 391 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 ALDH5A1P51649 535 aaPredicted RBP11.91□□□□□ -0.5
CCDC40-203ENST00000374877 DRG2P55039 364 aaKnown RBP11.91□□□□□ -0.5
CCDC40-203ENST00000374877 SPIRE1Q08AE8 756 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 AUHQ13825 339 aaKnown RBP11.91□□□□□ -0.5
CCDC40-203ENST00000374877 MESDQ14696 234 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 ZKSCAN8Q15776 578 aaPredicted RBP11.91□□□□□ -0.5
CCDC40-203ENST00000374877 CROCCP2Q86T23 111 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 RDH13Q8NBN7 331 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 PIGOQ8TEQ8 1089 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 KLHL29Q96CT2 875 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 KCNK9Q9NPC2 374 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 PARP2Q9UGN5 583 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 RABGAP1Q9Y3P9 1069 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 ACSL3O95573 720 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 GH2P01242 217 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 SLURP2P0DP57 97 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 SNAP25P60880 206 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 NCALDP61601 193 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 RRP1BQ14684 758 aaKnown RBP11.91□□□□□ -0.5
CCDC40-203ENST00000374877 GPR162Q16538 588 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 SEL1L2Q5TEA6 688 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 NUGGCQ68CJ6 796 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 CRELD2Q6UXH1 353 aaPredicted RBP11.91□□□□□ -0.5
CCDC40-203ENST00000374877 INTS2Q9H0H0 1204 aaKnown RBP11.91□□□□□ -0.5
CCDC40-203ENST00000374877 DEFB129Q9H1M3 183 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 HOMER3Q9NSC5 361 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 RGL1Q9NZL6 768 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 ZBTB21Q9ULJ3 1066 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 C15orf41Q9Y2V0 281 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 USP15Q9Y4E8 981 aaPredicted RBP11.91□□□□□ -0.5
CCDC40-203ENST00000374877 ANKRD63C9JTQ0 380 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 PODXLO00592 558 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 GDF11O95390 407 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 RARAP10276 462 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 ZNF746Q6NUN9 644 aaPredicted RBP11.91□□□□□ -0.5
CCDC40-203ENST00000374877 SIAH1Q8IUQ4 282 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 ETNPPLQ8TBG4 499 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 SLC20A1Q8WUM9 679 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 EBF2Q9HAK2 575 aa11.91□□□□□ -0.5
CCDC40-203ENST00000374877 DDNO94850 711 aaPredicted RBP11.9□□□□□ -0.5
CCDC40-203ENST00000374877 SUN1O94901 812 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 CREB1P16220 341 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 CAP2P40123 477 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 RIPK1Q13546 671 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 SLMAPQ14BN4 828 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 CLUL1Q15846 466 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 BMT2Q1RMZ1 405 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 DCAF15Q66K64 600 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 DPY19L2Q6NUT2 758 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 EXOC3L1Q86VI1 746 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 ZDHHC14Q8IZN3 488 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 GDAP1Q8TB36 358 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 FAXDC2Q96IV6 333 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 NOP53Q9NZM5 478 aaKnown RBP11.9□□□□□ -0.5
CCDC40-203ENST00000374877 APEX2Q9UBZ4 518 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 TCRBV7S2A1N4TA0A589 114 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 TMEM120BA0PK00 339 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 DIAPH2O60879 1101 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 FTLP02792 175 aaPredicted RBP11.9□□□□□ -0.5
CCDC40-203ENST00000374877 CDC25CP30307 473 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 MYL7Q01449 175 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 ANGEL2Q5VTE6 544 aaKnown RBP11.9□□□□□ -0.5
CCDC40-203ENST00000374877 SLC30A10Q6XR72 485 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 FMNL3Q8IVF7 1028 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 RHOT2Q8IXI1 618 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 CCHCR1Q8TD31 782 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 ARHGEF2Q92974 986 aaKnown RBP11.9□□□□□ -0.5
CCDC40-203ENST00000374877 GMCL1Q96IK5 515 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 DDX23Q9BUQ8 820 aaKnown RBP11.9□□□□□ -0.5
CCDC40-203ENST00000374877 GPR88Q9GZN0 384 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 CCDC134Q9H6E4 229 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 ARHGEF10LQ9HCE6 1279 aa11.9□□□□□ -0.5
CCDC40-203ENST00000374877 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.9□□□□□ -0.5
CCDC40-203ENST00000374877 ASTN2O75129 1339 aaPredicted RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms