RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 MIEF2Q96C03 454 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 NUP85Q9BW27 656 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 WNT8AQ9H1J5 351 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 ECT2Q9H8V3 914 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 HOMER3Q9NSC5 361 aa17.59■□□□□ 0.41
SDC4-201ENST00000372733 TP73O15350 636 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 ECEL1O95672 775 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 CFBP00751 764 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 CHKAP35790 457 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 CRKP46108 304 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 ALDH5A1P51649 535 aaPredicted RBP17.58■□□□□ 0.41
SDC4-201ENST00000372733 PRELPP51888 382 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 CALCOCO2Q13137 446 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 PPP2R5CQ13362 524 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 SNX1Q13596 522 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 RRP1BQ14684 758 aaKnown RBP17.58■□□□□ 0.41
SDC4-201ENST00000372733 VSTM1Q6UX27 236 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 SH3BP5LQ7L8J4 393 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 C1orf54Q8WWF1 131 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 RUNDC3BQ96NL0 473 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 CEP83Q9Y592 693 aa17.58■□□□□ 0.41
SDC4-201ENST00000372733 SPATA31A6Q5VVP1 1343 aa17.58■□□□□ 0.4
SDC4-201ENST00000372733 CLDN3O15551 220 aa17.58■□□□□ 0.4
SDC4-201ENST00000372733 NQO1P15559 274 aaKnown RBP17.58■□□□□ 0.4
SDC4-201ENST00000372733 HOXA10P31260 410 aaPredicted RBP17.58■□□□□ 0.4
SDC4-201ENST00000372733 JAG1P78504 1218 aa17.58■□□□□ 0.4
SDC4-201ENST00000372733 TCEAL1Q15170 157 aa17.58■□□□□ 0.4
SDC4-201ENST00000372733 HHIPL2Q6UWX4 724 aa17.58■□□□□ 0.4
SDC4-201ENST00000372733 MIGA2Q7L4E1 593 aa17.58■□□□□ 0.4
SDC4-201ENST00000372733 CYFIP1Q7L576 1253 aa17.58■□□□□ 0.4
SDC4-201ENST00000372733 KIF2BQ8N4N8 673 aa17.58■□□□□ 0.4
SDC4-201ENST00000372733 GDAP1Q8TB36 358 aa17.58■□□□□ 0.4
SDC4-201ENST00000372733 AGAP11Q8TF27 550 aa17.58■□□□□ 0.4
SDC4-201ENST00000372733 CBWD1Q9BRT8 395 aa17.58■□□□□ 0.4
SDC4-201ENST00000372733 ZC3H12CQ9C0D7 883 aaKnown RBP17.58■□□□□ 0.4
SDC4-201ENST00000372733 NOCTQ9UK39 431 aaKnown RBP17.58■□□□□ 0.4
SDC4-201ENST00000372733 RBBP6Q7Z6E9 1792 aaKnown RBP17.57■□□□□ 0.4
SDC4-201ENST00000372733 IGF2BP3O00425 579 aaKnown RBP eCLIP17.57■□□□□ 0.4
SDC4-201ENST00000372733 GH1P01241 217 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 BMP3P12645 472 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 VAMP7P51809 220 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 KRT17Q04695 432 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 ZNF568Q3ZCX4 644 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 EPC2Q52LR7 807 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 C1orf220Q5T0J3 134 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 NUGGCQ68CJ6 796 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 PLEKHO2Q8TD55 490 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 PRCCQ92733 491 aaPredicted RBP17.57■□□□□ 0.4
SDC4-201ENST00000372733 SLC5A5Q92911 643 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 ZNF653Q96CK0 615 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 GMCL1Q96IK5 515 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 UNC45AQ9H3U1 944 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 HGSO14964 777 aaPredicted RBP17.57■□□□□ 0.4
SDC4-201ENST00000372733 CYP26A1O43174 497 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 RIPK1Q13546 671 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 TRMT10CQ7L0Y3 403 aaKnown RBP17.57■□□□□ 0.4
SDC4-201ENST00000372733 SLC47A2Q86VL8 602 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 SLC9A9Q8IVB4 645 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 NSMCE1Q8WV22 266 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 NACC1Q96RE7 527 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 LXNQ9BS40 222 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 FAM198AQ9UFP1 575 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 ASIC3Q9UHC3 531 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 PNMA3Q9UL41 463 aa17.57■□□□□ 0.4
SDC4-201ENST00000372733 ARHGEF35A5YM69 484 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 A8MUI8 341 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 KIF1CO43896 1103 aaKnown RBP17.56■□□□□ 0.4
SDC4-201ENST00000372733 MTA2O94776 668 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 TMEM179Q6ZVK1 233 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 GMCL1P1Q8NEA9 526 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 ATG4AQ8WYN0 398 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 CRAMP1Q96RY5 1269 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 STRA6Q9BX79 667 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 KCNK9Q9NPC2 374 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 PRR12Q9ULL5 1215 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 LRRC37AA6NMS7 1700 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 MPP2Q14168 576 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 NAA25Q14CX7 972 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 TRIP13Q15645 432 aaPredicted RBP17.56■□□□□ 0.4
SDC4-201ENST00000372733 ABCB5Q2M3G0 1257 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 GALNTL6Q49A17 601 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 TBC1D10BQ4KMP7 808 aaPredicted RBP17.56■□□□□ 0.4
SDC4-201ENST00000372733 CRELD2Q6UXH1 353 aaPredicted RBP17.56■□□□□ 0.4
SDC4-201ENST00000372733 INTS8Q75QN2 995 aaKnown RBP17.56■□□□□ 0.4
SDC4-201ENST00000372733 KCTD17Q8N5Z5 321 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 C12orf50Q8NA57 414 aaPredicted RBP17.56■□□□□ 0.4
SDC4-201ENST00000372733 ROPN1BQ9BZX4 212 aaPredicted RBP17.56■□□□□ 0.4
SDC4-201ENST00000372733 EBF2Q9HAK2 575 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 ROPN1Q9HAT0 212 aaPredicted RBP17.56■□□□□ 0.4
SDC4-201ENST00000372733 KCNQ5Q9NR82 932 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 LRRC4BQ9NT99 713 aa17.56■□□□□ 0.4
SDC4-201ENST00000372733 DDX39AO00148 427 aaKnown RBP17.55■□□□□ 0.4
SDC4-201ENST00000372733 PIK3CDO00329 1044 aa17.55■□□□□ 0.4
SDC4-201ENST00000372733 SUN1O94901 812 aa17.55■□□□□ 0.4
SDC4-201ENST00000372733 ZNF268Q14587 947 aaPredicted RBP17.55■□□□□ 0.4
SDC4-201ENST00000372733 SGO2Q562F6 1265 aa17.55■□□□□ 0.4
SDC4-201ENST00000372733 KIAA0825Q8IV33 1275 aa17.55■□□□□ 0.4
SDC4-201ENST00000372733 THOC1Q96FV9 657 aaKnown RBP17.55■□□□□ 0.4
SDC4-201ENST00000372733 KREMEN1Q96MU8 473 aa17.55■□□□□ 0.4
SDC4-201ENST00000372733 PI4KBQ9UBF8 816 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms