RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 TTI2Q6NXR4 508 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 SCUBE1Q8IWY4 988 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 PPP1R36Q96LQ0 422 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 SLAIN2Q9P270 581 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 CCPG1Q9ULG6 757 aa12.51□□□□□ -0.41
PTPN1-201ENST00000371621 SYNGAP1Q96PV0 1343 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 PSMG1O95456 288 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 MAPK4P31152 587 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 KCNQ4P56696 695 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 NAA20P61599 178 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 MAPK7Q13164 816 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 THEMISQ8N1K5 641 aaPredicted RBP12.5□□□□□ -0.41
PTPN1-201ENST00000371621 GIPC3Q8TF64 312 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 RBM15Q96T37 977 aaKnown RBP eCLIP12.5□□□□□ -0.412e-6■■■□□ 15
PTPN1-201ENST00000371621 ANKRD2Q9GZV1 360 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 SELENONQ9NZV5 590 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 LRRC10BA6NIK2 292 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 P4HA2O15460 535 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 LYNP07948 512 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 HSPA6P17066 643 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 MCAMP43121 646 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 MAGEA10P43363 369 aaPredicted RBP12.5□□□□□ -0.41
PTPN1-201ENST00000371621 BCAMP50895 628 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 MRPS15P82914 257 aaKnown RBP12.5□□□□□ -0.41
PTPN1-201ENST00000371621 CCDC15Q0P6D6 951 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 BNIP1Q12981 228 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 NT5DC1Q5TFE4 455 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 GJB7Q6PEY0 223 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 DCUN1D2Q6PH85 259 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 ZNF554Q86TJ5 538 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 GIMAP8Q8ND71 665 aaPredicted RBP12.5□□□□□ -0.41
PTPN1-201ENST00000371621 C17orf50Q8WW18 174 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 YIPF2Q9BWQ6 316 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 FTLP02792 175 aaPredicted RBP12.5□□□□□ -0.41
PTPN1-201ENST00000371621 CIITAP33076 1130 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 PBX1P40424 430 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 TUFMP49411 452 aaKnown RBP12.5□□□□□ -0.41
PTPN1-201ENST00000371621 BASP1P80723 227 aaKnown RBP12.5□□□□□ -0.41
PTPN1-201ENST00000371621 MREGQ8N565 214 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 SREK1Q8WXA9 508 aaKnown RBP12.5□□□□□ -0.41
PTPN1-201ENST00000371621 RSAD2Q8WXG1 361 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 ATG4AQ8WYN0 398 aa12.5□□□□□ -0.41
PTPN1-201ENST00000371621 UBE2TQ9NPD8 197 aaPredicted RBP12.5□□□□□ -0.41
PTPN1-201ENST00000371621 PRPF3O43395 683 aaKnown RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 SAT1P21673 171 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 RPS6P62753 249 aaKnown RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 UBE3CQ15386 1083 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 PUM3Q15397 648 aaKnown RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 OASLQ15646 514 aaKnown RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 LGSNQ5TDP6 509 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 PLEKHA7Q6IQ23 1121 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 EXOC3L1Q86VI1 746 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 CRLF3Q8IUI8 442 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 SPOCK2Q92563 424 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 ACAP3Q96P50 834 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 STRBPQ96SI9 672 aaKnown RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 KLHL4Q9C0H6 718 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 DNM3Q9UQ16 869 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 SALL1Q9NSC2 1324 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 OCM2P0CE71 109 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 OCMP0CE72 109 aaPredicted RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 KRT4P19013 534 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 LBRQ14739 615 aaKnown RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 ARL6IP4Q66PJ3 421 aaKnown RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 AADACL2Q6P093 401 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 ARID3BQ8IVW6 561 aaPredicted RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 TPCN2Q8NHX9 752 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 PPP2R3CQ969Q6 453 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 TRPV6Q9H1D0 765 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 CNGB3Q9NQW8 809 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 NAGPAQ9UK23 515 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 DNAJC12Q9UKB3 198 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 RTCBQ9Y3I0 505 aaKnown RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 MYOM1P52179 1685 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 ATMINO43313 823 aaPredicted RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 LPXNO60711 386 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 RTP1P59025 263 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 MEA1Q16626 185 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 ANKRD20A4Q4UJ75 823 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 IZUMO3Q5VZ72 239 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 PRPF39Q86UA1 669 aaKnown RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 ATP11CQ8NB49 1132 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 GFM2Q969S9 779 aaKnown RBP12.49□□□□□ -0.41
PTPN1-201ENST00000371621 MAGEB18Q96M61 343 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 TSNARE1Q96NA8 513 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 ZBED2Q9BTP6 218 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 PCDHA4Q9UN74 947 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 NAALADL1Q9UQQ1 740 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 FIS1Q9Y3D6 152 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 SETBP1Q9Y6X0 1596 aa12.49□□□□□ -0.41
PTPN1-201ENST00000371621 CRB1P82279 1406 aa12.48□□□□□ -0.41
PTPN1-201ENST00000371621 PIK3C2BO00750 1634 aa12.48□□□□□ -0.41
PTPN1-201ENST00000371621 KIAA1210Q9ULL0 1709 aa12.48□□□□□ -0.41
PTPN1-201ENST00000371621 KLRF2D3W0D1 207 aa12.48□□□□□ -0.41
PTPN1-201ENST00000371621 RHOBTB3O94955 611 aa12.48□□□□□ -0.41
PTPN1-201ENST00000371621 PDIA2Q13087 525 aaKnown RBP12.48□□□□□ -0.41
PTPN1-201ENST00000371621 LRRC6Q86X45 466 aa12.48□□□□□ -0.41
PTPN1-201ENST00000371621 RNF25Q96BH1 459 aaPredicted RBP12.48□□□□□ -0.41
PTPN1-201ENST00000371621 PACSIN3Q9UKS6 424 aa12.48□□□□□ -0.41
PTPN1-201ENST00000371621 BLOC1S6Q9UL45 172 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms