RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 CALML4Q96GE6 196 aa20.88■□□□□ 0.93
CKS1B-203ENST00000368439 USP28Q96RU2 1077 aa20.88■□□□□ 0.93
CKS1B-203ENST00000368439 CCSER1Q9C0I3 900 aa20.88■□□□□ 0.93
CKS1B-203ENST00000368439 ZBP1Q9H171 429 aa20.88■□□□□ 0.93
CKS1B-203ENST00000368439 ZSCAN16Q9H4T2 348 aaPredicted RBP20.88■□□□□ 0.93
CKS1B-203ENST00000368439 TMEM134Q9H6X4 195 aa20.88■□□□□ 0.93
CKS1B-203ENST00000368439 ENTPD7Q9NQZ7 604 aa20.88■□□□□ 0.93
CKS1B-203ENST00000368439 KCND2Q9NZV8 630 aa20.88■□□□□ 0.93
CKS1B-203ENST00000368439 SRPRBQ9Y5M8 271 aaKnown RBP20.88■□□□□ 0.93
CKS1B-203ENST00000368439 PHLPP2Q6ZVD8 1323 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 NPHP3-ACAD11A0A0J9YXS1 232 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 C2orf71A6NGG8 1288 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 CCDC169A6NNP5 214 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 K7ERI5 159 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 NRP1O14786 923 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 EFEMP2O95967 443 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 ALDH2P05091 517 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 SSBP05455 408 aaKnown RBP eCLIP20.87■□□□□ 0.93
CKS1B-203ENST00000368439 PLCG1P19174 1290 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 RAD51AP2Q09MP3 1159 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 DMP1Q13316 513 aaPredicted RBP20.87■□□□□ 0.93
CKS1B-203ENST00000368439 TMC7Q7Z402 723 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 HACE1Q8IYU2 909 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 MRPL43Q8N983 215 aaKnown RBP20.87■□□□□ 0.93
CKS1B-203ENST00000368439 EPSTI1Q96J88 318 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 CDCA3Q99618 268 aaPredicted RBP20.87■□□□□ 0.93
CKS1B-203ENST00000368439 CXCL16Q9H2A7 254 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 KMT5AQ9NQR1 393 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 MARCH5Q9NX47 278 aa20.87■□□□□ 0.93
CKS1B-203ENST00000368439 PLS3P13797 630 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 CEBPZQ03701 1054 aaKnown RBP20.86■□□□□ 0.93
CKS1B-203ENST00000368439 SMC1AQ14683 1233 aaKnown RBP20.86■□□□□ 0.93
CKS1B-203ENST00000368439 SPECC1Q5M775 1068 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 TMEM184AQ6ZMB5 413 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 VPS52Q8N1B4 723 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 SPIRE2Q8WWL2 714 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 RAD54LQ92698 747 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 FAM193BQ96PV7 902 aaPredicted RBP20.86■□□□□ 0.93
CKS1B-203ENST00000368439 PTPRHQ9HD43 1115 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 SNTG2Q9NY99 539 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 KLK14Q9P0G3 267 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 PARP2Q9UGN5 583 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 TNFSF13BQ9Y275 285 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 FAN1Q9Y2M0 1017 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 RBM19Q9Y4C8 960 aaKnown RBP20.86■□□□□ 0.93
CKS1B-203ENST00000368439 IRAK3Q9Y616 596 aa20.86■□□□□ 0.93
CKS1B-203ENST00000368439 SLC16A4O15374 487 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 MBTPS2O43462 519 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 CTSAP10619 480 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 NDUFV1P49821 464 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 CACNB1Q02641 598 aaPredicted RBP20.85■□□□□ 0.93
CKS1B-203ENST00000368439 COASYQ13057 564 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 MCM6Q14566 821 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 SLC39A14Q15043 492 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 CLUL1Q15846 466 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 ATF7IP2Q5U623 682 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 FAM178BQ8IXR5 827 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 TMEM161BQ8NDZ6 487 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 CLIC6Q96NY7 704 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 ACO2Q99798 780 aaKnown RBP20.85■□□□□ 0.93
CKS1B-203ENST00000368439 CD320Q9NPF0 282 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 CD207Q9UJ71 328 aa20.85■□□□□ 0.93
CKS1B-203ENST00000368439 BARX2Q9UMQ3 279 aaPredicted RBP20.85■□□□□ 0.93
CKS1B-203ENST00000368439 ABLIM1O14639 778 aa20.84■□□□□ 0.93
CKS1B-203ENST00000368439 PTGESO14684 152 aa20.84■□□□□ 0.93
CKS1B-203ENST00000368439 NASPP49321 788 aaPredicted RBP20.84■□□□□ 0.93
CKS1B-203ENST00000368439 GRIK3Q13003 919 aa20.84■□□□□ 0.93
CKS1B-203ENST00000368439 TMEM132AQ24JP5 1023 aa20.84■□□□□ 0.93
CKS1B-203ENST00000368439 DCAF4L1Q3SXM0 396 aa20.84■□□□□ 0.93
CKS1B-203ENST00000368439 RNF168Q8IYW5 571 aaPredicted RBP20.84■□□□□ 0.93
CKS1B-203ENST00000368439 AUTS2Q8WXX7 1259 aa20.84■□□□□ 0.93
CKS1B-203ENST00000368439 KCNN1Q92952 543 aa20.84■□□□□ 0.93
CKS1B-203ENST00000368439 REEP2Q9BRK0 252 aa20.84■□□□□ 0.93
CKS1B-203ENST00000368439 ADPGKQ9BRR6 497 aa20.84■□□□□ 0.93
CKS1B-203ENST00000368439 DAXXQ9UER7 740 aaPredicted RBP20.84■□□□□ 0.93
CKS1B-203ENST00000368439 FSD2A1L4K1 749 aa20.83■□□□□ 0.93
CKS1B-203ENST00000368439 F8W810 466 aa20.83■□□□□ 0.93
CKS1B-203ENST00000368439 CLASP2O75122 1294 aaKnown RBP20.83■□□□□ 0.93
CKS1B-203ENST00000368439 RECQL4O94761 1208 aa20.83■□□□□ 0.93
CKS1B-203ENST00000368439 CXCL14O95715 111 aa20.83■□□□□ 0.93
CKS1B-203ENST00000368439 MAPTP10636 758 aaKnown RBP20.83■□□□□ 0.93
CKS1B-203ENST00000368439 PROZP22891 400 aa20.83■□□□□ 0.93
CKS1B-203ENST00000368439 OR1G1P47890 313 aa20.83■□□□□ 0.93
CKS1B-203ENST00000368439 NCKAP1LP55160 1127 aa20.83■□□□□ 0.93
CKS1B-203ENST00000368439 SMAD4Q13485 552 aaKnown RBP20.83■□□□□ 0.93
CKS1B-203ENST00000368439 NAB2Q15742 525 aa20.83■□□□□ 0.93
CKS1B-203ENST00000368439 SMAD2Q15796 467 aaKnown RBP20.83■□□□□ 0.93
CKS1B-203ENST00000368439 GPBP1Q86WP2 473 aa20.83■□□□□ 0.93
CKS1B-203ENST00000368439 SMRP1Q8NCR6 262 aa20.83■□□□□ 0.93
CKS1B-203ENST00000368439 TARS2Q9BW92 718 aaKnown RBP20.83■□□□□ 0.93
CKS1B-203ENST00000368439 MRPL4Q9BYD3 311 aaKnown RBP20.83■□□□□ 0.93
CKS1B-203ENST00000368439 ODF2LQ9ULJ1 636 aa20.83■□□□□ 0.93
CKS1B-203ENST00000368439 PRG3Q9Y2Y8 225 aaPredicted RBP20.83■□□□□ 0.93
CKS1B-203ENST00000368439 LILRB3O75022 631 aa20.82■□□□□ 0.92
CKS1B-203ENST00000368439 DDIT3P35638 169 aa20.82■□□□□ 0.92
CKS1B-203ENST00000368439 ZNF131P52739 623 aa20.82■□□□□ 0.92
CKS1B-203ENST00000368439 GIT2Q14161 759 aa20.82■□□□□ 0.92
CKS1B-203ENST00000368439 DHX8Q14562 1220 aaKnown RBP20.82■□□□□ 0.92
CKS1B-203ENST00000368439 PTPN14Q15678 1187 aa20.82■□□□□ 0.92
CKS1B-203ENST00000368439 LINC00301Q8NCQ3 95 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms