RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 KIAA1586Q9HCI6 787 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 FAM207AQ9NSI2 230 aaPredicted RBP20.25■□□□□ 0.83
CLN3-206ENST00000360019 TNFSF13BQ9Y275 285 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 ZKSCAN5Q9Y2L8 839 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 ZNF233A6NK53 670 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 TSPAN1O60635 241 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 CABYRO75952 493 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 HARSP12081 509 aaKnown RBP20.25■□□□□ 0.83
CLN3-206ENST00000360019 TRIM21P19474 475 aaKnown RBP20.25■□□□□ 0.83
CLN3-206ENST00000360019 CCZ1BP86790 482 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 CCZ1P86791 482 aaPredicted RBP20.25■□□□□ 0.83
CLN3-206ENST00000360019 PPP3CAQ08209 521 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 FIGNQ5HY92 759 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 MPZL3Q6UWV2 235 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 PARD3BQ8TEW8 1205 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 CCDC127Q96BQ5 260 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 TSEN34Q9BSV6 310 aaKnown RBP20.25■□□□□ 0.83
CLN3-206ENST00000360019 GCOM2Q9BZD3 368 aaPredicted RBP20.25■□□□□ 0.83
CLN3-206ENST00000360019 MMRN2Q9H8L6 949 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 LDHAP00338 332 aaKnown RBP20.24■□□□□ 0.83
CLN3-206ENST00000360019 ARF4P18085 180 aaPredicted RBP20.24■□□□□ 0.83
CLN3-206ENST00000360019 FGFR4P22455 802 aa20.24■□□□□ 0.83
CLN3-206ENST00000360019 ITGA7Q13683 1181 aa20.24■□□□□ 0.83
CLN3-206ENST00000360019 MTFR1Q15390 333 aa20.24■□□□□ 0.83
CLN3-206ENST00000360019 SLC9C1Q4G0N8 1177 aa20.24■□□□□ 0.83
CLN3-206ENST00000360019 SEZ6Q53EL9 994 aa20.24■□□□□ 0.83
CLN3-206ENST00000360019 SERINC5Q86VE9 423 aa20.24■□□□□ 0.83
CLN3-206ENST00000360019 NME8Q8N427 588 aa20.24■□□□□ 0.83
CLN3-206ENST00000360019 WNT8BQ93098 351 aa20.24■□□□□ 0.83
CLN3-206ENST00000360019 NUP58Q9BVL2 599 aa20.24■□□□□ 0.83
CLN3-206ENST00000360019 PAK6Q9NQU5 681 aaPredicted RBP20.24■□□□□ 0.83
CLN3-206ENST00000360019 GTPBP10A4D1E9 387 aaKnown RBP20.23■□□□□ 0.83
CLN3-206ENST00000360019 LRRIQ3A6PVS8 624 aaPredicted RBP20.23■□□□□ 0.83
CLN3-206ENST00000360019 DARSP14868 501 aaKnown RBP20.23■□□□□ 0.83
CLN3-206ENST00000360019 WNT7BP56706 349 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 NOLC1Q14978 699 aaKnown RBP eCLIP20.23■□□□□ 0.83
CLN3-206ENST00000360019 TMEM132AQ24JP5 1023 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 ZNF568Q3ZCX4 644 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 DPY19L2P1Q6NXN4 242 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 CNGA4Q8IV77 575 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 TMEM40Q8WWA1 233 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 CPB2Q96IY4 423 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 LSM14BQ9BX40 385 aaKnown RBP20.23■□□□□ 0.83
CLN3-206ENST00000360019 TMX1Q9H3N1 280 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 PDZD7Q9H5P4 517 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 AGPAT5Q9NUQ2 364 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 CAPN11Q9UMQ6 739 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 RBAK-RBAKDNI3L0D1 243 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 NOL4O94818 638 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 MYCP01106 439 aaPredicted RBP20.23■□□□□ 0.83
CLN3-206ENST00000360019 SLC9A1P19634 815 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 TNFSF9P41273 254 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 APBA1Q02410 837 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 EXOC3L4Q17RC7 722 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 TMC2Q8TDI7 906 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 GLT1D1Q96MS3 346 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 POP1Q99575 1024 aaKnown RBP20.23■□□□□ 0.83
CLN3-206ENST00000360019 CDT1Q9H211 546 aa20.23■□□□□ 0.83
CLN3-206ENST00000360019 RBAKQ9NYW8 714 aaPredicted RBP20.23■□□□□ 0.83
CLN3-206ENST00000360019 A0A1W2PQJ5 194 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 OGTO15294 1046 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 ERLIN2O94905 339 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 TPM1P09493 284 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 EIF4BP23588 611 aaKnown RBP20.22■□□□□ 0.83
CLN3-206ENST00000360019 PON1P27169 355 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 KRT9P35527 623 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 GCLMP48507 274 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 MYL7Q01449 175 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 ENPEPQ07075 957 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 SNX17Q15036 470 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 GBP6Q6ZN66 633 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 ZSCAN30Q86W11 494 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 TMEM139Q8IV31 216 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 ARRDC4Q8NCT1 418 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 VTI1AQ96AJ9 217 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 TOPORSQ9NS56 1045 aaPredicted RBP20.22■□□□□ 0.83
CLN3-206ENST00000360019 GCNT4Q9P109 453 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 PYCARDQ9ULZ3 195 aa20.22■□□□□ 0.83
CLN3-206ENST00000360019 A0A1W2PQ45 241 aaPredicted RBP20.21■□□□□ 0.83
CLN3-206ENST00000360019 A0A1W2PQY0 241 aa20.21■□□□□ 0.83
CLN3-206ENST00000360019 PSMD6Q15008 389 aa20.21■□□□□ 0.83
CLN3-206ENST00000360019 CEP120Q8N960 986 aa20.21■□□□□ 0.83
CLN3-206ENST00000360019 NEK11Q8NG66 645 aa20.21■□□□□ 0.83
CLN3-206ENST00000360019 PANX2Q96RD6 677 aa20.21■□□□□ 0.83
CLN3-206ENST00000360019 TMEM117Q9H0C3 514 aa20.21■□□□□ 0.83
CLN3-206ENST00000360019 ABHD10Q9NUJ1 306 aa20.21■□□□□ 0.83
CLN3-206ENST00000360019 LUC7L2Q9Y383 392 aaKnown RBP20.21■□□□□ 0.83
CLN3-206ENST00000360019 A0A1B0GUA9 196 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 DLATP10515 647 aaKnown RBP20.2■□□□□ 0.82
CLN3-206ENST00000360019 SKILP12757 684 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 ACTN1P12814 892 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 HOXA11P31270 313 aaPredicted RBP20.2■□□□□ 0.82
CLN3-206ENST00000360019 CRYBB1P53674 252 aaPredicted RBP20.2■□□□□ 0.82
CLN3-206ENST00000360019 PTGISQ16647 500 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 ZNF710Q8N1W2 664 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 IQCDQ96DY2 449 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 GANQ9H2C0 597 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 PDE11AQ9HCR9 933 aa20.2■□□□□ 0.82
CLN3-206ENST00000360019 TRMT13Q9NUP7 481 aaKnown RBP20.2■□□□□ 0.82
CLN3-206ENST00000360019 CPSF3Q9UKF6 684 aaKnown RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms