RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 MYO1GB0I1T2 1018 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 LCP1P13796 627 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 KLHL38Q2WGJ6 581 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 TMEM270Q6UE05 265 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 KRT78Q8N1N4 520 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 TTLL11Q8NHH1 800 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 PCSK1NQ9UHG2 260 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 PRG3Q9Y2Y8 225 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-202ENST00000358808 ZHX2Q9Y6X8 837 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 HEG1Q9ULI3 1381 aa10.77□□□□□ -0.68
CLIP1-202ENST00000358808 CDK12Q9NYV4 1490 aaPredicted RBP10.77□□□□□ -0.68
CLIP1-202ENST00000358808 CALB1P05937 261 aa10.77□□□□□ -0.68
CLIP1-202ENST00000358808 SOAT1P35610 550 aa10.77□□□□□ -0.68
CLIP1-202ENST00000358808 PTPN21Q16825 1174 aa10.77□□□□□ -0.68
CLIP1-202ENST00000358808 MRFAP1L1Q96HT8 127 aa10.77□□□□□ -0.68
CLIP1-202ENST00000358808 PPP1R13BQ96KQ4 1090 aa10.77□□□□□ -0.68
CLIP1-202ENST00000358808 TRIM8Q9BZR9 551 aa10.77□□□□□ -0.68
CLIP1-202ENST00000358808 ADNPQ9H2P0 1102 aa10.77□□□□□ -0.68
CLIP1-202ENST00000358808 USE1Q9NZ43 259 aa10.77□□□□□ -0.68
CLIP1-202ENST00000358808 A8MXQ7 604 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 RPS6KA4O75676 772 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 RALBP11234 206 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 GUCY2CP25092 1073 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 CEP78Q5JTW2 689 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 ANKS6Q68DC2 871 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 KIAA2013Q8IYS2 634 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 FOXP1Q9H334 677 aaPredicted RBP10.77□□□□□ -0.69
CLIP1-202ENST00000358808 GPR108Q9NPR9 543 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 MYO3BQ8WXR4 1341 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 SEC24DO94855 1032 aaPredicted RBP10.77□□□□□ -0.69
CLIP1-202ENST00000358808 SNRNP48Q6IEG0 339 aaKnown RBP10.77□□□□□ -0.69
CLIP1-202ENST00000358808 PPM1NQ8N819 430 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 FAM213AQ9BRX8 229 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 CNOT8Q9UFF9 292 aaKnown RBP10.77□□□□□ -0.69
CLIP1-202ENST00000358808 LCMT1Q9UIC8 334 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 ABCC4O15439 1325 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 CPSF1Q10570 1443 aaKnown RBP10.77□□□□□ -0.69
CLIP1-202ENST00000358808 GOLGA8RI6L899 631 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 ECE2O60344 883 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 HMBSP08397 361 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 DARSP14868 501 aaKnown RBP10.77□□□□□ -0.69
CLIP1-202ENST00000358808 GUCA1AP43080 201 aaPredicted RBP10.77□□□□□ -0.69
CLIP1-202ENST00000358808 SEPT2Q15019 361 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 COBLL1Q53SF7 1204 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 AGR3Q8TD06 166 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 WRNIP1Q96S55 665 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 SMAD5Q99717 465 aaKnown RBP10.77□□□□□ -0.69
CLIP1-202ENST00000358808 AURKCQ9UQB9 309 aa10.77□□□□□ -0.69
CLIP1-202ENST00000358808 A0A087WWV3 80 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 H0Y3Z8 333 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ADCY3O60266 1144 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 TLR2O60603 784 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 GFAPP14136 432 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 SLC7A5Q01650 507 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ROR1Q01973 937 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 SUSD4Q5VX71 490 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 FAM117BQ6P1L5 589 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 TBC1D1Q86TI0 1168 aaPredicted RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 C1orf131Q8NDD1 294 aaKnown RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ZNF555Q8NEP9 628 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ASAP3Q8TDY4 903 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ATXN7L3BQ96GX2 97 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 MUC3BQ9H195 1237 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 FAM217BQ9NTX9 383 aaPredicted RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 SPTLC3Q9NUV7 552 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 BSDC1Q9NW68 430 aaPredicted RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 PRAMEF22A3QJZ6 481 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 RASA4BC9J798 803 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 FAM47E-STBD1D6RA91 191 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 RASA4O43374 803 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 IL10P22301 178 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 EIF3BP55884 814 aaKnown RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 PDAP1Q13442 181 aaKnown RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 TADA1Q96BN2 335 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 DYNLL2Q96FJ2 89 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 SPATA33Q96N06 139 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 DHX35Q9H5Z1 703 aaKnown RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ECT2Q9H8V3 914 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 STMN3Q9NZ72 180 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 SRPRBQ9Y5M8 271 aaKnown RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 REREQ9P2R6 1566 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 H0Y626 953 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 PIK3R2O00459 728 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ATP9BO43861 1147 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 TRIM16O95361 564 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 KRT14P02533 472 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 CEP55Q53EZ4 464 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ALFQ53S48 1182 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 ADCK1Q86TW2 530 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 CDKL3Q8IVW4 592 aaPredicted RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 RHOT2Q8IXI1 618 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 SYNE4Q8N205 404 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 GTF2A1LQ9UNN4 478 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 PNMA6FA0A0J9YX94 578 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 PRRG1O14668 218 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 FGGP02679 453 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 BEND6Q5SZJ8 279 aaPredicted RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 BTNL9Q6UXG8 535 aa10.76□□□□□ -0.69
CLIP1-202ENST00000358808 EPM2AIP1Q7L775 607 aaPredicted RBP10.76□□□□□ -0.69
CLIP1-202ENST00000358808 FGD2Q7Z6J4 655 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms