RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 HIST1H2ADP20671 130 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 SCP2P22307 547 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 ST8SIA6P61647 398 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 CYP27A1Q02318 531 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 PKP1Q13835 747 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 STAT4Q14765 748 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 UGP2Q16851 508 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 THEMIS2Q5TEJ8 643 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 PPM1NQ8N819 430 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 HIST1H2AHQ96KK5 128 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 HIST1H2AJQ99878 128 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 TMEM47Q9BQJ4 181 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 H2AFJQ9BTM1 129 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 ERBB3P21860 1342 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 KRT87PA6NCN2 255 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 C5orf58C9J3I9 102 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 HDLBPQ00341 1268 aaKnown RBP6.84□□□□□ -1.31
UPF2-201ENST00000356352 PDIA2Q13087 525 aaKnown RBP6.84□□□□□ -1.31
UPF2-201ENST00000356352 EIF2B5Q13144 721 aaKnown RBP6.84□□□□□ -1.31
UPF2-201ENST00000356352 NECTIN1Q15223 517 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 DUOXA2Q1HG44 320 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 DCAF4L1Q3SXM0 396 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 PPP4R4Q6NUP7 873 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 SPATA2LQ8IUW3 424 aaPredicted RBP6.84□□□□□ -1.31
UPF2-201ENST00000356352 DDIASQ8IXT1 998 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 ZNF555Q8NEP9 628 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 TTLL11Q8NHH1 800 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 TGS1Q96RS0 853 aaKnown RBP6.84□□□□□ -1.31
UPF2-201ENST00000356352 MPP6Q9NZW5 540 aa6.84□□□□□ -1.31
UPF2-201ENST00000356352 HERC5Q9UII4 1024 aaKnown RBP6.84□□□□□ -1.31
UPF2-201ENST00000356352 OVOS2A0A0G2JMS6 1433 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 OVOS2A0A0J9YW53 1432 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 OVOS2Q6IE36 1432 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 A0A1W2PQC6 194 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 UBA6A0AVT1 1052 aaPredicted RBP6.84□□□□□ -1.32
UPF2-201ENST00000356352 TARSL2A2RTX5 802 aaKnown RBP6.84□□□□□ -1.32
UPF2-201ENST00000356352 USP17L15C9J2P7 530 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 USP17L13C9JLJ4 530 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 USP17L11C9JVI0 530 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 USP17L18D6R9N7 530 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 USP17L22D6RA61 530 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 USP17L17D6RBQ6 530 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 USP17L19D6RCP7 530 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 USP17L20D6RJB6 530 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 SMAPO00193 183 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 DIAPH2O60879 1101 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 CYP2C19P33261 490 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 USP17L24Q0WX57 530 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 GPS1Q13098 491 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 SLFNL1Q499Z3 407 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 SUSD4Q5VX71 490 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 PASD1Q8IV76 773 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 RFFLQ8WZ73 363 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 PHF21AQ96BD5 680 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 GABBR1Q9UBS5 961 aa6.84□□□□□ -1.32
UPF2-201ENST00000356352 MAGI2Q86UL8 1455 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 SPDYE5A6NIY4 337 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 LRRIQ3A6PVS8 624 aaPredicted RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 CSPG5O95196 566 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 ARIH2O95376 493 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 ADORA2BP29275 332 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 LTKP29376 864 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 SERPINB9P50453 376 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 NME3Q13232 169 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 EPHA7Q15375 998 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 ALX1Q15699 326 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 P3H1Q32P28 736 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 SPDYE7PQ495Y7 208 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 ZNF394Q53GI3 561 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 FASTKD1Q53R41 847 aaKnown RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 FAM102AQ5T9C2 384 aaPredicted RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 PKN3Q6P5Z2 889 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 RCOR2Q8IZ40 523 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 GUF1Q8N442 669 aaKnown RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 TNIP2Q8NFZ5 429 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 HEMGNQ9BXL5 484 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 TAF1DQ9H5J8 278 aaPredicted RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 RUBCNLQ9H714 662 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 BARHL2Q9NY43 387 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 RBAKQ9NYW8 714 aaPredicted RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 NARFQ9UHQ1 456 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 MAD2L2Q9UI95 211 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 CFAP69A5D8W1 941 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 GMNCA6NCL1 334 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 IQCA1LA6NCM1 817 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 C16orf96A6NNT2 1141 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 ANGPT2O15123 496 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 GSNP06396 782 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 ATXN8OSP0DMR3 200 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 TYK2P29597 1187 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 CDC25AP30304 524 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 CCDC15Q0P6D6 951 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 EFL1Q7Z2Z2 1120 aaKnown RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 PRUNE1Q86TP1 453 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 ZBED8Q8IZ13 594 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 RMDN1Q96DB5 314 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 DHX35Q9H5Z1 703 aaKnown RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 SMYD3Q9H7B4 428 aa6.83□□□□□ -1.32
UPF2-201ENST00000356352 FAM217BQ9NTX9 383 aaPredicted RBP6.83□□□□□ -1.32
UPF2-201ENST00000356352 AIPL1Q9NZN9 384 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms