RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 SLFN12Q8IYM2 578 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 SLC30A5Q8TAD4 765 aa17.05■□□□□ 0.32
HMGA1-202ENST00000347617 U2AF1L4Q8WU68 220 aaKnown RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 MAP3K20Q9NYL2 800 aaKnown RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 ASTN2O75129 1339 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-202ENST00000347617 DDX3XO00571 662 aaKnown RBP eCLIP17.04■□□□□ 0.326e-37■■■□□ 18.5
HMGA1-202ENST00000347617 SHBGP04278 402 aa17.04■□□□□ 0.32
HMGA1-202ENST00000347617 PLA2G4BP0C869 781 aa17.04■□□□□ 0.32
HMGA1-202ENST00000347617 ATP2A2P16615 1042 aaKnown RBP17.04■□□□□ 0.32
HMGA1-202ENST00000347617 GALCP54803 685 aa17.04■□□□□ 0.32
HMGA1-202ENST00000347617 GHRHRQ02643 423 aa17.04■□□□□ 0.32
HMGA1-202ENST00000347617 NOL9Q5SY16 702 aaKnown RBP17.04■□□□□ 0.32
HMGA1-202ENST00000347617 NAIF1Q69YI7 327 aaPredicted RBP17.04■□□□□ 0.32
HMGA1-202ENST00000347617 RHOT2Q8IXI1 618 aa17.04■□□□□ 0.32
HMGA1-202ENST00000347617 TRPM4Q8TD43 1214 aa17.04■□□□□ 0.32
HMGA1-202ENST00000347617 ZNF483Q8TF39 744 aaPredicted RBP17.04■□□□□ 0.32
HMGA1-202ENST00000347617 VTI1AQ96AJ9 217 aa17.04■□□□□ 0.32
HMGA1-202ENST00000347617 SERPINB12Q96P63 405 aa17.04■□□□□ 0.32
HMGA1-202ENST00000347617 ADARB2Q9NS39 739 aaKnown RBP17.04■□□□□ 0.32
HMGA1-202ENST00000347617 ABCF3Q9NUQ8 709 aa17.04■□□□□ 0.32
HMGA1-202ENST00000347617 PFASO15067 1338 aa17.04■□□□□ 0.32
HMGA1-202ENST00000347617 RPTORQ8N122 1335 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 TLDC2A0PJX2 215 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 IGF2BP3O00425 579 aaKnown RBP eCLIP17.03■□□□□ 0.329e-9■■■■□ 21.5
HMGA1-202ENST00000347617 SLC9A1P19634 815 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 MSH2P43246 934 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 PLTPP55058 493 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 ARHGAP4P98171 946 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 SLC29A2Q14542 456 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 RNF43Q68DV7 783 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 GPBP1Q86WP2 473 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 NELFCDQ8IXH7 590 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 UBL4BQ8N7F7 174 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 DYDC1Q8WWB3 177 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 HAS1Q92839 578 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 FAM20AQ96MK3 541 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 GLIS2Q9BZE0 524 aaPredicted RBP17.03■□□□□ 0.32
HMGA1-202ENST00000347617 EHMT1Q9H9B1 1298 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 SLC24A3Q9HC58 644 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 AGAP1Q9UPQ3 857 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 RABGAP1Q9Y3P9 1069 aa17.03■□□□□ 0.32
HMGA1-202ENST00000347617 C19orf81C9J6K1 198 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 MARCH6O60337 910 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 DIAPH2O60879 1101 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 ICAM1P05362 532 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 POLR2MP0CAP2 368 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 ALAS1P13196 640 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 CCNB1P14635 433 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 PTGIRP43119 386 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 CCNHP51946 323 aaPredicted RBP17.02■□□□□ 0.32
HMGA1-202ENST00000347617 HIRAP54198 1017 aaPredicted RBP17.02■□□□□ 0.32
HMGA1-202ENST00000347617 ACVR2BQ13705 512 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 AUHQ13825 339 aaKnown RBP17.02■□□□□ 0.32
HMGA1-202ENST00000347617 KNOP1Q1ED39 458 aaKnown RBP17.02■□□□□ 0.32
HMGA1-202ENST00000347617 BMT2Q1RMZ1 405 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 PARP6Q2NL67 630 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 USH1GQ495M9 461 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 C11orf63Q6NUN7 778 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 ASRGL1Q7L266 308 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 KCTD17Q8N5Z5 321 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 RBM46Q8TBY0 533 aaKnown RBP17.02■□□□□ 0.32
HMGA1-202ENST00000347617 SH3TC2Q8TF17 1288 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 C12orf42Q96LP6 360 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 ZNF570Q96NI8 536 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 NUDT12Q9BQG2 462 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 TRIM31Q9BZY9 425 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 MAF1Q9H063 256 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 GOLPH3Q9H4A6 298 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 SIX2Q9NPC8 291 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 TXLNGQ9NUQ3 528 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 GRHL1Q9NZI5 618 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 PCDHA12Q9UN75 941 aa17.02■□□□□ 0.32
HMGA1-202ENST00000347617 RPL26L1Q9UNX3 145 aaKnown RBP17.02■□□□□ 0.32
HMGA1-202ENST00000347617 RIPK2O43353 540 aa17.02■□□□□ 0.31
HMGA1-202ENST00000347617 KRT18P05783 430 aaKnown RBP17.02■□□□□ 0.31
HMGA1-202ENST00000347617 ACTN1P12814 892 aa17.02■□□□□ 0.31
HMGA1-202ENST00000347617 BACE1P56817 501 aa17.02■□□□□ 0.31
HMGA1-202ENST00000347617 AP1ARQ63HQ0 302 aa17.02■□□□□ 0.31
HMGA1-202ENST00000347617 SPATA21Q7Z572 469 aa17.02■□□□□ 0.31
HMGA1-202ENST00000347617 SLC35G2Q8TBE7 412 aa17.02■□□□□ 0.31
HMGA1-202ENST00000347617 FBF1Q8TES7 1133 aa17.02■□□□□ 0.31
HMGA1-202ENST00000347617 KLRG1Q96E93 195 aa17.02■□□□□ 0.31
HMGA1-202ENST00000347617 PICK1Q9NRD5 415 aa17.02■□□□□ 0.31
HMGA1-202ENST00000347617 TYW1Q9NV66 732 aaKnown RBP17.02■□□□□ 0.31
HMGA1-202ENST00000347617 DOCK1Q14185 1865 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 A6NHS1 94 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 AHCYL1O43865 530 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 PTPRAP18433 802 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 CYP11B2P19099 503 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 RFX1P22670 979 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 CTNNA2P26232 953 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 SOX5P35711 763 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 SNAP25P60880 206 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 KCNJ2P63252 427 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 IFI35P80217 286 aaPredicted RBP17.01■□□□□ 0.31
HMGA1-202ENST00000347617 NFIL3Q16649 462 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 EPM2AIP1Q7L775 607 aaPredicted RBP17.01■□□□□ 0.31
HMGA1-202ENST00000347617 LDHDQ86WU2 507 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 ZNF280CQ8ND82 737 aa17.01■□□□□ 0.31
HMGA1-202ENST00000347617 FBXO25Q8TCJ0 367 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms