RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 PI16Q6UXB8 463 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 RGS9BPQ6ZS82 235 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 NCCRP1Q6ZVX7 275 aaPredicted RBP8.7□□□□□ -1.02
ATG4A-201ENST00000343524 ACAD11Q709F0 780 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 ARMCX6Q7L4S7 300 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 CYFIP1Q7L576 1253 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 TMC4Q7Z404 712 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 EXOC3L1Q86VI1 746 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 JAMLQ86YT9 394 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 CCNJLQ8IV13 435 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 GUF1Q8N442 669 aaKnown RBP8.7□□□□□ -1.02
ATG4A-201ENST00000343524 RIBC1Q8N443 379 aaPredicted RBP8.7□□□□□ -1.02
ATG4A-201ENST00000343524 SLC17A8Q8NDX2 589 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 PHC3Q8NDX5 983 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 SUPT20HQ8NEM7 779 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 TPCN2Q8NHX9 752 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 EPS8L3Q8TE67 593 aaKnown RBP8.7□□□□□ -1.02
ATG4A-201ENST00000343524 DDX12PQ92771 950 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 WNT2BQ93097 391 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 TUBGCP5Q96RT8 1024 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 TCHPQ9BT92 498 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 YIPF2Q9BWQ6 316 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 LRRC27Q9C0I9 530 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 ANKRD2Q9GZV1 360 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 NT5C3AQ9H0P0 336 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 SPATA7Q9P0W8 599 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 BARX2Q9UMQ3 279 aaPredicted RBP8.7□□□□□ -1.02
ATG4A-201ENST00000343524 STXBP5LQ9Y2K9 1186 aa8.7□□□□□ -1.02
ATG4A-201ENST00000343524 MYH4Q9Y623 1939 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 SYNGAP1Q96PV0 1343 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 CAPN9O14815 690 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 MAGEB2O15479 319 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 STRNO43815 780 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 GFPT2O94808 682 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 SMARCA1P28370 1054 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 MCM7P33993 719 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 MLH1P40692 756 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 MAGEA10P43363 369 aaPredicted RBP8.69□□□□□ -1.02
ATG4A-201ENST00000343524 PLTPP55058 493 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 TCIRG1Q13488 830 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 RAPGEF1Q13905 1077 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 SLC45A4Q5BKX6 768 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 SOGA3Q5TF21 947 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 FYB2Q5VWT5 728 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 TBC1D9BQ66K14 1250 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 MPRIPQ6WCQ1 1025 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 TMTC3Q6ZXV5 915 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 CATIPQ7Z7H3 387 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 MAP7D3Q8IWC1 876 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 USHBP1Q8N6Y0 703 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 PLBD2Q8NHP8 589 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 MGARPQ8TDB4 240 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 IP6K1Q92551 441 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 MCUR1Q96AQ8 359 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 HES6Q96HZ4 224 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 TRIM51Q9BSJ1 452 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 TRIM9Q9C026 710 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 TANGO6Q9C0B7 1094 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 KIAA1683Q9H0B3 1180 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 KCNK9Q9NPC2 374 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 TRPV5Q9NQA5 729 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 TCP11L1Q9NUJ3 509 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 THEGQ9P2T0 379 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 HAO1Q9UJM8 370 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 CCDC88AQ3V6T2 1871 aa8.69□□□□□ -1.02
ATG4A-201ENST00000343524 A0A087X0T9 212 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 A0A0J9YVX5 310 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 PVALEFA0A1B0GWK0 134 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 F8W8V4 182 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 NDC80O14777 642 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 KIAA0391O15091 583 aaKnown RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 PHF2O75151 1096 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 ENTPD5O75356 428 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 TCEA3O75764 348 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 DDAH1O94760 285 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 GAS8O95995 478 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 FAM228BP0C875 321 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 ZBTB48P10074 688 aaPredicted RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 PIM1P11309 404 aaPredicted RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 BRAFP15056 766 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 SERPINB3P29508 390 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 EPS15P42566 896 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 RTP1P59025 263 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 GPSM2P81274 684 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 XIAPP98170 497 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 PDE1BQ01064 536 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 MGAT5Q09328 741 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 SF3A3Q12874 501 aaKnown RBP eCLIP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 PRPF4BQ13523 1007 aaKnown RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 DCTN2Q13561 401 aaKnown RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 LRRC14Q15048 493 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 PKN1Q16512 942 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 NAALADL2Q58DX5 795 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 VSTM1Q6UX27 236 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 CROCCP3Q8IVE0 287 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 ANKRD35Q8N283 1001 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 TTC8Q8TAM2 541 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 ESR2Q92731 530 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 SLC7A6OSQ96CW6 309 aaPredicted RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 LSM14BQ9BX40 385 aaKnown RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms