RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 HOMER3Q9NSC5 361 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 SLTMQ9NWH9 1034 aaKnown RBP eCLIP24.02■■□□□ 1.44
TRIM28-202ENST00000341753 SCN9AQ15858 1988 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 CHKAP35790 457 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 COPS2P61201 443 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 MPP2Q14168 576 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 SLMAPQ14BN4 828 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 TRIP13Q15645 432 aaPredicted RBP24.02■■□□□ 1.44
TRIM28-202ENST00000341753 TNFAIP8L3Q5GJ75 292 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 DACT2Q5SW24 774 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 RHOT2Q8IXI1 618 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 C1orf54Q8WWF1 131 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 KAT5Q92993 513 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 ART4Q93070 314 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 PWWP2AQ96N64 755 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 STMN4Q9H169 189 aaPredicted RBP24.02■■□□□ 1.44
TRIM28-202ENST00000341753 NOP53Q9NZM5 478 aaKnown RBP24.02■■□□□ 1.44
TRIM28-202ENST00000341753 TBK1Q9UHD2 729 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 VAV3Q9UKW4 847 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 FRMD4BQ9Y2L6 1034 aa24.02■■□□□ 1.44
TRIM28-202ENST00000341753 SUN1O94901 812 aa24.01■■□□□ 1.43
TRIM28-202ENST00000341753 EYA4O95677 639 aa24.01■■□□□ 1.43
TRIM28-202ENST00000341753 PEX5P50542 639 aa24.01■■□□□ 1.43
TRIM28-202ENST00000341753 RRP1BQ14684 758 aaKnown RBP24.01■■□□□ 1.43
TRIM28-202ENST00000341753 BZW1Q7L1Q6 419 aaKnown RBP24.01■■□□□ 1.43
TRIM28-202ENST00000341753 MAEAQ7L5Y9 396 aa24.01■■□□□ 1.43
TRIM28-202ENST00000341753 KCNV2Q8TDN2 545 aa24.01■■□□□ 1.43
TRIM28-202ENST00000341753 PARP2Q9UGN5 583 aa24.01■■□□□ 1.43
TRIM28-202ENST00000341753 ICA1Q05084 483 aa24.01■■□□□ 1.43
TRIM28-202ENST00000341753 GALNTL6Q49A17 601 aa24.01■■□□□ 1.43
TRIM28-202ENST00000341753 BTNL9Q6UXG8 535 aa24.01■■□□□ 1.43
TRIM28-202ENST00000341753 NSMFQ6X4W1 530 aa24.01■■□□□ 1.43
TRIM28-202ENST00000341753 CRYGNQ8WXF5 182 aa24.01■■□□□ 1.43
TRIM28-202ENST00000341753 AGPAT3Q9NRZ7 376 aa24.01■■□□□ 1.43
TRIM28-202ENST00000341753 TISP43B9A030 160 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 ZNF76P36508 570 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 NAIF1Q69YI7 327 aaPredicted RBP24■■□□□ 1.43
TRIM28-202ENST00000341753 PODNQ7Z5L7 613 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 TMEM109Q9BVC6 243 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 PCIF1Q9H4Z3 704 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 OLFML3Q9NRN5 406 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 NRXN2Q9P2S2 1712 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 SPOPO43791 374 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 EXOC3O60645 756 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 ALAS1P13196 640 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 BNIP1Q12981 228 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 KIF22Q14807 665 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 SPATA21Q7Z572 469 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 DYDC2Q96IM9 177 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 PCDHB18PQ96TA0 734 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 AAASQ9NRG9 546 aa24■■□□□ 1.43
TRIM28-202ENST00000341753 SRCAPQ6ZRS2 3230 aa23.99■■□□□ 1.43
TRIM28-202ENST00000341753 MIF4GDA9UHW6 222 aaKnown RBP23.99■■□□□ 1.43
TRIM28-202ENST00000341753 F5H6K3 240 aa23.99■■□□□ 1.43
TRIM28-202ENST00000341753 CALCOCO2Q13137 446 aa23.99■■□□□ 1.43
TRIM28-202ENST00000341753 HS2ST1Q7LGA3 356 aa23.99■■□□□ 1.43
TRIM28-202ENST00000341753 SLC13A5Q86YT5 568 aaPredicted RBP23.99■■□□□ 1.43
TRIM28-202ENST00000341753 PI4KBQ9UBF8 816 aa23.99■■□□□ 1.43
TRIM28-202ENST00000341753 SLC8A3P57103 927 aa23.99■■□□□ 1.43
TRIM28-202ENST00000341753 GPC5P78333 572 aa23.99■■□□□ 1.43
TRIM28-202ENST00000341753 C11orf63Q6NUN7 778 aa23.99■■□□□ 1.43
TRIM28-202ENST00000341753 SAMD1Q6SPF0 538 aaPredicted RBP23.99■■□□□ 1.43
TRIM28-202ENST00000341753 MAB21L3Q8N8X9 362 aa23.99■■□□□ 1.43
TRIM28-202ENST00000341753 TAOK3Q9H2K8 898 aa23.99■■□□□ 1.43
TRIM28-202ENST00000341753 PASKQ96RG2 1323 aa23.99■■□□□ 1.43
TRIM28-202ENST00000341753 CLDN3O15551 220 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 VPS41P49754 854 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 Q4G0T1 1027 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 RNF207Q6ZRF8 634 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 SPDL1Q96EA4 605 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 PARVGQ9HBI0 331 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 ARHGEF10LQ9HCE6 1279 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.98■■□□□ 1.43
TRIM28-202ENST00000341753 SGPL1O95470 568 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 GH2P01242 217 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 ALADP13716 330 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 CCNHP51946 323 aaPredicted RBP23.98■■□□□ 1.43
TRIM28-202ENST00000341753 KYNUQ16719 465 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 MFSD5Q6N075 450 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 FAM178BQ8IXR5 827 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 CYP4X1Q8N118 509 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 CCHCR1Q8TD31 782 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 ATG4AQ8WYN0 398 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 CCDC17Q96LX7 622 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 ASIC3Q9UHC3 531 aa23.98■■□□□ 1.43
TRIM28-202ENST00000341753 SLC26A4O43511 780 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 MSH2P43246 934 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 SIX1Q15475 284 aaPredicted RBP23.97■■□□□ 1.43
TRIM28-202ENST00000341753 EMSYQ7Z589 1322 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 SIPA1L1O43166 1804 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 TP73O15350 636 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 ECEL1O95672 775 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 NDUFB10O96000 172 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 BRAFP15056 766 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 HSPA6P17066 643 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 GAP43P17677 238 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 UBXN2AP68543 259 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 KRT17Q04695 432 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 MGAT5Q09328 741 aa23.97■■□□□ 1.43
TRIM28-202ENST00000341753 AP3B2Q13367 1082 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms