RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 DCAF4L1Q3SXM0 396 aa24.23■■□□□ 1.47
SDC3-202ENST00000339394 ZCWPW2Q504Y3 356 aa24.23■■□□□ 1.47
SDC3-202ENST00000339394 ARMCX5Q6P1M9 558 aa24.23■■□□□ 1.47
SDC3-202ENST00000339394 MSTO1Q9BUK6 570 aa24.23■■□□□ 1.47
SDC3-202ENST00000339394 ANO10Q9NW15 660 aa24.23■■□□□ 1.47
SDC3-202ENST00000339394 CGNQ9P2M7 1197 aaKnown RBP24.23■■□□□ 1.47
SDC3-202ENST00000339394 LAMA2P24043 3122 aaKnown RBP24.23■■□□□ 1.47
SDC3-202ENST00000339394 ZNF623O75123 536 aa24.22■■□□□ 1.47
SDC3-202ENST00000339394 CCNE1P24864 410 aa24.22■■□□□ 1.47
SDC3-202ENST00000339394 APBB1IPQ7Z5R6 666 aaPredicted RBP24.22■■□□□ 1.47
SDC3-202ENST00000339394 SMG8Q8ND04 991 aaKnown RBP24.22■■□□□ 1.47
SDC3-202ENST00000339394 NELFBQ8WX92 580 aa24.22■■□□□ 1.47
SDC3-202ENST00000339394 HERVK_113Q902F9 699 aa24.22■■□□□ 1.47
SDC3-202ENST00000339394 P2RX5Q93086 422 aa24.22■■□□□ 1.47
SDC3-202ENST00000339394 FUCA2Q9BTY2 467 aa24.22■■□□□ 1.47
SDC3-202ENST00000339394 PCIF1Q9H4Z3 704 aa24.22■■□□□ 1.47
SDC3-202ENST00000339394 CXXC1Q9P0U4 656 aaPredicted RBP24.22■■□□□ 1.47
SDC3-202ENST00000339394 HES2Q9Y543 173 aa24.22■■□□□ 1.47
SDC3-202ENST00000339394 IPPQ9Y573 584 aa24.22■■□□□ 1.47
SDC3-202ENST00000339394 CEP290O15078 2479 aa24.22■■□□□ 1.47
SDC3-202ENST00000339394 CALUO43852 315 aaPredicted RBP24.21■■□□□ 1.47
SDC3-202ENST00000339394 SKIP12755 728 aa24.21■■□□□ 1.47
SDC3-202ENST00000339394 IBSPP21815 317 aaPredicted RBP24.21■■□□□ 1.47
SDC3-202ENST00000339394 RAB27AP51159 221 aa24.21■■□□□ 1.47
SDC3-202ENST00000339394 WDR5P61964 334 aaKnown RBP24.21■■□□□ 1.47
SDC3-202ENST00000339394 PAK1Q13153 545 aa24.21■■□□□ 1.47
SDC3-202ENST00000339394 ANKRD40Q6AI12 368 aa24.21■■□□□ 1.47
SDC3-202ENST00000339394 ECHDC2Q86YB7 292 aa24.21■■□□□ 1.47
SDC3-202ENST00000339394 CEP120Q8N960 986 aa24.21■■□□□ 1.47
SDC3-202ENST00000339394 NXF3Q9H4D5 531 aaKnown RBP24.21■■□□□ 1.47
SDC3-202ENST00000339394 DACH1Q9UI36 760 aa24.21■■□□□ 1.47
SDC3-202ENST00000339394 AGO2Q9UKV8 859 aaKnown RBP24.21■■□□□ 1.47
SDC3-202ENST00000339394 CTNND2Q9UQB3 1225 aa24.21■■□□□ 1.47
SDC3-202ENST00000339394 TRIM49BA6NDI0 452 aa24.2■■□□□ 1.47
SDC3-202ENST00000339394 ZBBXA8MT70 800 aa24.2■■□□□ 1.47
SDC3-202ENST00000339394 FAM189A1O60320 539 aa24.2■■□□□ 1.47
SDC3-202ENST00000339394 CCDC192P0DO97 292 aa24.2■■□□□ 1.47
SDC3-202ENST00000339394 SEZ6Q53EL9 994 aa24.2■■□□□ 1.47
SDC3-202ENST00000339394 C12orf56Q8IXR9 622 aa24.2■■□□□ 1.47
SDC3-202ENST00000339394 THNSL1Q8IYQ7 743 aa24.2■■□□□ 1.47
SDC3-202ENST00000339394 OGTO15294 1046 aa24.2■■□□□ 1.46
SDC3-202ENST00000339394 ATF7P17544 494 aaPredicted RBP24.2■■□□□ 1.46
SDC3-202ENST00000339394 STX17P56962 302 aa24.2■■□□□ 1.46
SDC3-202ENST00000339394 C9orf50Q5SZB4 431 aa24.2■■□□□ 1.46
SDC3-202ENST00000339394 MRPL10Q7Z7H8 261 aaKnown RBP24.2■■□□□ 1.46
SDC3-202ENST00000339394 ZNF598Q86UK7 904 aaKnown RBP24.2■■□□□ 1.46
SDC3-202ENST00000339394 CRIPAKQ8N1N5 446 aa24.2■■□□□ 1.46
SDC3-202ENST00000339394 ZSWIM2Q8NEG5 633 aa24.2■■□□□ 1.46
SDC3-202ENST00000339394 TMEM174Q8WUU8 243 aa24.2■■□□□ 1.46
SDC3-202ENST00000339394 UBE2OQ9C0C9 1292 aaKnown RBP24.2■■□□□ 1.46
SDC3-202ENST00000339394 RNF39Q9H2S5 420 aa24.2■■□□□ 1.46
SDC3-202ENST00000339394 SNTG2Q9NY99 539 aa24.2■■□□□ 1.46
SDC3-202ENST00000339394 HSPBP1Q9NZL4 362 aa24.2■■□□□ 1.46
SDC3-202ENST00000339394 EOMESO95936 686 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 NR3C1P04150 777 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 KCNJ6P48051 423 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 OSTNP61366 133 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 DEFB103AP81534 67 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 LRRC63Q05C16 580 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 EDRF1Q3B7T1 1238 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 CT47A1Q5JQC4 288 aaPredicted RBP24.19■■□□□ 1.46
SDC3-202ENST00000339394 ZBTB41Q5SVQ8 909 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 TTI2Q6NXR4 508 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 C11orf57Q6ZUT1 292 aaPredicted RBP24.19■■□□□ 1.46
SDC3-202ENST00000339394 TMEM192Q8IY95 271 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 RNF169Q8NCN4 708 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 SAAL1Q96ER3 474 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 MED15Q96RN5 788 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 TSG101Q99816 390 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 ELAC1Q9H777 363 aaKnown RBP24.19■■□□□ 1.46
SDC3-202ENST00000339394 DMAC2Q9NW81 257 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 TMEM161AQ9NX61 479 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 RWDD2AQ9UIY3 292 aa24.19■■□□□ 1.46
SDC3-202ENST00000339394 BICDL2A1A5D9 508 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 MEIS3P2A8K0S8 358 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 KIAA0391O15091 583 aaKnown RBP24.18■■□□□ 1.46
SDC3-202ENST00000339394 AMHP03971 560 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 NR2F2P24468 414 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 AKAP5P24588 427 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 ERCC5P28715 1186 aaPredicted RBP24.18■■□□□ 1.46
SDC3-202ENST00000339394 GRM5P41594 1212 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 ACOT2P49753 483 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 CYP2J2P51589 502 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 SHHQ15465 462 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 NFIL3Q16649 462 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 SLC9A9Q8IVB4 645 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 LPPQ93052 612 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 TOP1MTQ969P6 601 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 EEF2KMTQ96G04 330 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 APOL6Q9BWW8 343 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 DNAJC25Q9H1X3 360 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 PCDHB7Q9Y5E2 793 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 LAMA3Q16787 3333 aa24.18■■□□□ 1.46
SDC3-202ENST00000339394 STAG3L1P0CL83 205 aa24.17■■□□□ 1.46
SDC3-202ENST00000339394 TNFSF9P41273 254 aa24.17■■□□□ 1.46
SDC3-202ENST00000339394 MYBPC2Q14324 1141 aa24.17■■□□□ 1.46
SDC3-202ENST00000339394 ANO6Q4KMQ2 910 aa24.17■■□□□ 1.46
SDC3-202ENST00000339394 RASIP1Q5U651 963 aa24.17■■□□□ 1.46
SDC3-202ENST00000339394 FOXR2Q6PJQ5 311 aa24.17■■□□□ 1.46
SDC3-202ENST00000339394 XXYLT1Q8NBI6 393 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms