RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 RFX8Q6ZV50 586 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 PDZD4Q76G19 769 aaPredicted RBP7.47□□□□□ -1.21
SMC1A-201ENST00000322213 SCUBE1Q8IWY4 988 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 ENGASEQ8NFI3 743 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 DACH2Q96NX9 599 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 ERP44Q9BS26 406 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 XPOTO43592 962 aaKnown RBP7.47□□□□□ -1.21
SMC1A-201ENST00000322213 ZCCHC18P0CG32 403 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 PSMC3P17980 439 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 NT5C2P49902 561 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 THOC5Q13769 683 aaKnown RBP7.47□□□□□ -1.21
SMC1A-201ENST00000322213 IRGCQ6NXR0 463 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 BARGINQ6ZT62 677 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 TMEM165Q9HC07 324 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 DNAJC17Q9NVM6 304 aaKnown RBP7.47□□□□□ -1.21
SMC1A-201ENST00000322213 COMMD3-BMI1R4GMX3 469 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 MYBL1P10243 752 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 GPC5P78333 572 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 SMCR8Q8TEV9 937 aaPredicted RBP7.47□□□□□ -1.21
SMC1A-201ENST00000322213 BHMTQ93088 406 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 ANKARQ7Z5J8 1434 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 IL10P22301 178 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 FXR1P51114 621 aaKnown RBP eCLIP7.47□□□□□ -1.21
SMC1A-201ENST00000322213 FLOT2Q14254 428 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 GALNT15Q8N3T1 639 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 STK32AQ8WU08 396 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 KCNK16Q96T55 309 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 CD209Q9NNX6 404 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 SEPT10Q9P0V9 454 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 PNPLA6Q8IY17 1366 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 CES2O00748 559 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 ATP9AO75110 1047 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 OATP04181 439 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 TRIP10Q15642 601 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 ARL8AQ96BM9 186 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 HDAC11Q96DB2 347 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 PAWRQ96IZ0 340 aaKnown RBP7.47□□□□□ -1.21
SMC1A-201ENST00000322213 EYA3Q99504 573 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 RNPEPL1Q9HAU8 725 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 ARFGEF1Q9Y6D6 1849 aa7.47□□□□□ -1.21
SMC1A-201ENST00000322213 A6NJR5 290 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 ATP6V1C1P21283 382 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 ARPC4P59998 168 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 DMPKQ09013 629 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 PLD3Q8IV08 490 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 CCDC103Q8IW40 242 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 MDM1Q8TC05 714 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 TRIM63Q969Q1 353 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 ANK1P16157 1881 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 AP5Z1O43299 807 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 TBC1D4O60343 1298 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 GPC4O75487 556 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 RFC5P40937 340 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 ALDH5A1P51649 535 aaPredicted RBP7.46□□□□□ -1.21
SMC1A-201ENST00000322213 VCPP55072 806 aaKnown RBP7.46□□□□□ -1.21
SMC1A-201ENST00000322213 NDUFA5Q16718 116 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 TAF1BQ53T94 588 aaPredicted RBP7.46□□□□□ -1.21
SMC1A-201ENST00000322213 NAALADL2Q58DX5 795 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 NT5C1BQ96P26 610 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 SH3GL2Q99962 352 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 GCOM2Q9BZD3 368 aaPredicted RBP7.46□□□□□ -1.21
SMC1A-201ENST00000322213 TPRP12270 2363 aaKnown RBP7.46□□□□□ -1.21
SMC1A-201ENST00000322213 SERPINB8P50452 374 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 ARHGDIAP52565 204 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 COPAP53621 1224 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 EPHB1P54762 984 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 INPP5AQ14642 412 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 PCNX4Q63HM2 1172 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 ZBED8Q8IZ13 594 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 RFWD2Q8NHY2 731 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 MRPL1Q9BYD6 325 aaKnown RBP7.46□□□□□ -1.21
SMC1A-201ENST00000322213 CYP26B1Q9NR63 512 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 ANAPC7Q9UJX3 599 aa7.46□□□□□ -1.21
SMC1A-201ENST00000322213 PHRF1Q9P1Y6 1649 aaKnown RBP7.46□□□□□ -1.21
SMC1A-201ENST00000322213 A0A1B0GW55 424 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 DUX4L2P0CJ85 424 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 DUX4L3P0CJ86 424 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 DUX4L4P0CJ87 422 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 DUX4L5P0CJ88 424 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 DUX4L6P0CJ89 424 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 DUX4L7P0CJ90 424 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 XRCC4Q13426 336 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 SLC29A2Q14542 456 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 MAPRE2Q15555 327 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 ZNF555Q8NEP9 628 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 SNRNP27Q8WVK2 155 aaKnown RBP7.46□□□□□ -1.22
SMC1A-201ENST00000322213 ATXN2LQ8WWM7 1075 aaKnown RBP7.46□□□□□ -1.22
SMC1A-201ENST00000322213 DUX4Q9UBX2 424 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 L3MBTL1Q9Y468 752 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 PCDHB4Q9Y5E5 795 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 RNF103-CHMP3A0A140T963 221 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 CFAP99D6REC4 459 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 PICALMQ13492 652 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 DARS2Q6PI48 645 aaKnown RBP7.46□□□□□ -1.22
SMC1A-201ENST00000322213 ZNF212Q9UDV6 495 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 USP6P35125 1406 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 POTEB3A0JP26 581 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 PAX3P23760 479 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 ADD2P35612 726 aa7.46□□□□□ -1.22
SMC1A-201ENST00000322213 PRPSAP1Q14558 356 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms