RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CTCFP49711 727 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 BNC1Q01954 994 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 BARGINQ6ZT62 677 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 ULK2Q8IYT8 1036 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 C2orf73Q8N5S3 287 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 DNAAF3Q8N9W5 541 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 ELAC2Q9BQ52 826 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 SGK1O00141 431 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 STX11O75558 287 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 CSF1RP07333 972 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 FAM200BP0CF97 657 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 PCNAP12004 261 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 CLCN6P51797 869 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 RAB4BP61018 213 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 STXBP2Q15833 593 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF544Q6NX49 715 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 MAEAQ7L5Y9 396 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 BBS7Q8IWZ6 715 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 PSMA8Q8TAA3 256 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 ZFRQ96KR1 1074 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 USP44Q9H0E7 712 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 KAT14Q9H8E8 782 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 H3BM21 787 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 O00370 1275 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 DYNC1LI2O43237 492 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 VCLP18206 1134 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 GMFBP60983 142 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 UBE2HP62256 183 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 PCGF5Q86SE9 256 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 KCNH5Q8NCM2 988 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 ADAM30Q9UKF2 790 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 DFFAO00273 331 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 RNMTO43148 476 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 STAM2O75886 525 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 CPP00450 1065 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 GHRP10912 638 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 CREB5Q02930 508 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 PPP2R5BQ15173 497 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 SNRNP48Q6IEG0 339 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 C4orf22Q6V702 233 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 GRPEL2Q8TAA5 225 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 GPRASP2Q96D09 838 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 CEP95Q96GE4 821 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 BTBD6Q96KE9 485 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 OSBPL3Q9H4L5 887 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 SH3GLB2Q9NR46 395 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 GGA2Q9UJY4 613 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 COQ6Q9Y2Z9 468 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 SLC4A4Q9Y6R1 1079 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 FPGT-TNNI3KV9GXZ4 949 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 TIAM1Q13009 1591 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF839A8K0R7 811 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 PPP2R1BP30154 601 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 IARSP41252 1262 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 RPS8P62241 208 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 CDKL1Q00532 357 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 HSF2Q03933 536 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 SYT16Q17RD7 645 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 CDC73Q6P1J9 531 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 CHD1LQ86WJ1 897 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 ARL8AQ96BM9 186 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF597Q96LX8 424 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 ACAP3Q96P50 834 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 RUVBL2Q9Y230 463 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 PCDHA2Q9Y5H9 948 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 ABCA5Q8WWZ7 1642 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 TRIM49BA6NDI0 452 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 TTLL13PA6NNM8 815 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 TRIM49D1C9J1S8 452 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 ARPC2O15144 300 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 POLR2MP0CAP2 368 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 ABCB4P21439 1286 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 TCEA1P23193 301 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 TUBG1P23258 451 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 SLFN5Q08AF3 891 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 MACC1Q6ZN28 852 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 HPS6Q86YV9 775 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 FAM162AQ96A26 154 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 POLKQ9UBT6 870 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 AFF4Q9UHB7 1163 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 ADAMTS8Q9UP79 889 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 NCOA1Q15788 1441 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 A0A087X0T9 212 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 SMIM31A0A1B0GVY4 71 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 TBX3O15119 743 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 MT-ND3P03897 115 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 DEFA5Q01523 94 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 PABPC4Q13310 644 aaKnown RBP eCLIP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 CENPPQ6IPU0 288 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 ARHGEF18Q6ZSZ5 1173 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 BEND4Q6ZU67 534 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 CHSY1Q86X52 802 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 SLC13A5Q86YT5 568 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 SYCE1Q8N0S2 351 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 SUPT20HQ8NEM7 779 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 WNK4Q96J92 1243 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 VPS50Q96JG6 964 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 SRP68Q9UHB9 627 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 ARHGAP35Q9NRY4 1499 aa8.04□□□□□ -1.12
LIMCH1-201ENST00000313860 C5orf58C9J3I9 102 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms