RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 SQORQ9Y6N5 450 aa19.86■□□□□ 0.77
HMGA1-201ENST00000311487 ZBBXA8MT70 800 aa19.85■□□□□ 0.77
HMGA1-201ENST00000311487 PAK1Q13153 545 aa19.85■□□□□ 0.77
HMGA1-201ENST00000311487 MPZL3Q6UWV2 235 aa19.85■□□□□ 0.77
HMGA1-201ENST00000311487 CREBRFQ8IUR6 639 aa19.85■□□□□ 0.77
HMGA1-201ENST00000311487 HVCN1Q96D96 273 aa19.85■□□□□ 0.77
HMGA1-201ENST00000311487 PDLIM2Q96JY6 352 aa19.85■□□□□ 0.77
HMGA1-201ENST00000311487 MSTO1Q9BUK6 570 aa19.85■□□□□ 0.77
HMGA1-201ENST00000311487 PCDHB2Q9Y5E7 798 aa19.85■□□□□ 0.77
HMGA1-201ENST00000311487 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.84■□□□□ 0.77
HMGA1-201ENST00000311487 DSC3Q14574 896 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 SLC27A1Q6PCB7 646 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 ZPBP2Q6X784 338 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 HS2ST1Q7LGA3 356 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 RPUSD2Q8IZ73 545 aaKnown RBP19.84■□□□□ 0.77
HMGA1-201ENST00000311487 FAM213AQ9BRX8 229 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 TYW1Q9NV66 732 aaKnown RBP19.84■□□□□ 0.77
HMGA1-201ENST00000311487 SNTG2Q9NY99 539 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 KLK14Q9P0G3 267 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 CXXC1Q9P0U4 656 aaPredicted RBP19.84■□□□□ 0.77
HMGA1-201ENST00000311487 LTBP2Q14767 1821 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 NR3C1P04150 777 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 PROZP22891 400 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 CASP4P49662 377 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 PPIGQ13427 754 aaKnown RBP eCLIP19.84■□□□□ 0.77
HMGA1-201ENST00000311487 IKBKEQ14164 716 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 NOLC1Q14978 699 aaKnown RBP eCLIP19.84■□□□□ 0.77
HMGA1-201ENST00000311487 CENPPQ6IPU0 288 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 CNKSR3Q6P9H4 555 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 SMG8Q8ND04 991 aaKnown RBP19.84■□□□□ 0.77
HMGA1-201ENST00000311487 FAM212AQ96EL1 285 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 DHTKD1Q96HY7 919 aaPredicted RBP19.84■□□□□ 0.77
HMGA1-201ENST00000311487 FAM84AQ96KN4 292 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 FAM105AQ9NUU6 356 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 HSPBP1Q9NZL4 362 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 AGO2Q9UKV8 859 aaKnown RBP19.84■□□□□ 0.77
HMGA1-201ENST00000311487 IPPQ9Y573 584 aa19.84■□□□□ 0.77
HMGA1-201ENST00000311487 UBE4BO95155 1302 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 A0A0B4J269 797 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 N4BP3O15049 544 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 KIF20AO95235 890 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 PIGRP01833 764 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 CCNE1P24864 410 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 RFC2P35250 354 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 DEFB103AP81534 67 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 SPAG1Q07617 926 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 C9orf50Q5SZB4 431 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 CEP135Q66GS9 1140 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 TMEM130Q8N3G9 435 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 DUSP9Q99956 384 aaKnown RBP19.83■□□□□ 0.77
HMGA1-201ENST00000311487 ADPGKQ9BRR6 497 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 RGS18Q9NS28 235 aa19.83■□□□□ 0.77
HMGA1-201ENST00000311487 PDXKO00764 312 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 PARNO95453 639 aaKnown RBP19.82■□□□□ 0.76
HMGA1-201ENST00000311487 FGBP02675 491 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 NR2F2P24468 414 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 AFF1P51825 1210 aaKnown RBP19.82■□□□□ 0.76
HMGA1-201ENST00000311487 MCL1Q07820 350 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 ADAM9Q13443 819 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 UVSSAQ2YD98 709 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 ZCWPW2Q504Y3 356 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 TMEM240Q5SV17 173 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 TTI2Q6NXR4 508 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 TSPYL2Q9H2G4 693 aaPredicted RBP19.82■□□□□ 0.76
HMGA1-201ENST00000311487 CHST12Q9NRB3 414 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 PARP2Q9UGN5 583 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 CDH23Q9H251 3354 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 CALUO43852 315 aaPredicted RBP19.82■□□□□ 0.76
HMGA1-201ENST00000311487 FGFR1P11362 822 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 AXLP30530 894 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 RGS19P49795 217 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 GATMP50440 423 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 PCBP1Q15365 356 aaKnown RBP eCLIP19.82■□□□□ 0.764e-50■■■■■ 45.9
HMGA1-201ENST00000311487 COBLL1Q53SF7 1204 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 CBWD2Q8IUF1 395 aa19.82■□□□□ 0.76
HMGA1-201ENST00000311487 EXOC3O60645 756 aa19.81■□□□□ 0.76
HMGA1-201ENST00000311487 STAG3L1P0CL83 205 aa19.81■□□□□ 0.76
HMGA1-201ENST00000311487 ABCD1P33897 745 aa19.81■□□□□ 0.76
HMGA1-201ENST00000311487 WNT7BP56706 349 aa19.81■□□□□ 0.76
HMGA1-201ENST00000311487 APBB2Q92870 758 aa19.81■□□□□ 0.76
HMGA1-201ENST00000311487 KCNN1Q92952 543 aa19.81■□□□□ 0.76
HMGA1-201ENST00000311487 TRIM44Q96DX7 344 aaPredicted RBP19.81■□□□□ 0.76
HMGA1-201ENST00000311487 TSG101Q99816 390 aa19.81■□□□□ 0.76
HMGA1-201ENST00000311487 SRRTQ9BXP5 876 aaKnown RBP19.81■□□□□ 0.76
HMGA1-201ENST00000311487 FTHL17Q9BXU8 183 aa19.81■□□□□ 0.76
HMGA1-201ENST00000311487 RWDD2AQ9UIY3 292 aa19.81■□□□□ 0.76
HMGA1-201ENST00000311487 TRAF3IP3Q9Y228 551 aa19.81■□□□□ 0.76
HMGA1-201ENST00000311487 STYXL1Q9Y6J8 313 aa19.81■□□□□ 0.76
HMGA1-201ENST00000311487 C9IYK1 514 aa19.8■□□□□ 0.76
HMGA1-201ENST00000311487 MEFVO15553 781 aaPredicted RBP19.8■□□□□ 0.76
HMGA1-201ENST00000311487 FAM189A1O60320 539 aa19.8■□□□□ 0.76
HMGA1-201ENST00000311487 ATF7P17544 494 aaPredicted RBP19.8■□□□□ 0.76
HMGA1-201ENST00000311487 SLFN12LQ6IEE8 588 aa19.8■□□□□ 0.76
HMGA1-201ENST00000311487 CRELD2Q6UXH1 353 aaPredicted RBP19.8■□□□□ 0.76
HMGA1-201ENST00000311487 SLC24A5Q71RS6 500 aa19.8■□□□□ 0.76
HMGA1-201ENST00000311487 CSGALNACT2Q8N6G5 542 aa19.8■□□□□ 0.76
HMGA1-201ENST00000311487 AOPEPQ8N6M6 819 aa19.8■□□□□ 0.76
HMGA1-201ENST00000311487 ZFP42Q96MM3 310 aa19.8■□□□□ 0.76
HMGA1-201ENST00000311487 RTN4Q9NQC3 1192 aaKnown RBP19.8■□□□□ 0.76
HMGA1-201ENST00000311487 A0A0U1RQF3 1178 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms