RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 THAP9Q9H5L6 903 aa11.7□□□□□ -0.54
LSM3-201ENST00000306024 ETNK1Q9HBU6 452 aa11.7□□□□□ -0.54
LSM3-201ENST00000306024 VCX3AQ9NNX9 186 aa11.7□□□□□ -0.54
LSM3-201ENST00000306024 KIF13BQ9NQT8 1826 aa11.7□□□□□ -0.54
LSM3-201ENST00000306024 A0A0G2JLL6 359 aaPredicted RBP11.69□□□□□ -0.54
LSM3-201ENST00000306024 DAPK3O43293 454 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 KCNJ2P63252 427 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 RGMBQ6NW40 437 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 PRRT2Q7Z6L0 340 aaPredicted RBP11.69□□□□□ -0.54
LSM3-201ENST00000306024 ADAT2Q7Z6V5 191 aaKnown RBP11.69□□□□□ -0.54
LSM3-201ENST00000306024 GTF3C2Q8WUA4 911 aaPredicted RBP11.69□□□□□ -0.54
LSM3-201ENST00000306024 PDCD2LQ9BRP1 358 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 SEPT11Q9NVA2 429 aaKnown RBP11.69□□□□□ -0.54
LSM3-201ENST00000306024 PFASO15067 1338 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 MYPNQ86TC9 1320 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 POLR2AP24928 1970 aaKnown RBP11.69□□□□□ -0.54
LSM3-201ENST00000306024 SRRM3A6NNA2 597 aaPredicted RBP11.69□□□□□ -0.54
LSM3-201ENST00000306024 FAM86B1E9PN63 330 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 MSH4O15457 936 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 FAM86B2P0C5J1 330 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 PDIA5Q14554 519 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 CWF19L1Q69YN2 538 aaKnown RBP11.69□□□□□ -0.54
LSM3-201ENST00000306024 WDR59Q6PJI9 974 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 SYCP3Q8IZU3 236 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 KLHL23Q8NBE8 558 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 CCT6BQ92526 530 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 PRMT1Q99873 361 aaKnown RBP11.69□□□□□ -0.54
LSM3-201ENST00000306024 CCSER1Q9C0I3 900 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 CUEDC2Q9H467 287 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 AZI2Q9H6S1 392 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 STK17AQ9UEE5 414 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 CPA4Q9UI42 421 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 PRLRP16471 622 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 YY1P25490 414 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 GCLCP48506 637 aaPredicted RBP11.69□□□□□ -0.54
LSM3-201ENST00000306024 FMO2Q99518 471 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 KCNH7Q9NS40 1196 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 MTRF1LQ9UGC7 380 aaKnown RBP11.69□□□□□ -0.54
LSM3-201ENST00000306024 C2CD2Q9Y426 696 aa11.69□□□□□ -0.54
LSM3-201ENST00000306024 POTEFA5A3E0 1075 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 PIK3CDO00329 1044 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 TBX3O15119 743 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 DKC1O60832 514 aaKnown RBP eCLIP11.68□□□□□ -0.54
LSM3-201ENST00000306024 ARP10275 920 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 MSH2P43246 934 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 CNTN2Q02246 1040 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 LACTB2Q53H82 288 aaPredicted RBP11.68□□□□□ -0.54
LSM3-201ENST00000306024 SH3D19Q5HYK7 790 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 SFMBT2Q5VUG0 894 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 SPRYD7Q5W111 196 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 POTEGQ6S5H5 508 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 POTEEQ6S8J3 1075 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 LBX2Q6XYB7 198 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 PEX26Q7Z412 305 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 CD302Q8IX05 232 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 RNF168Q8IYW5 571 aaPredicted RBP11.68□□□□□ -0.54
LSM3-201ENST00000306024 TBC1D22BQ9NU19 505 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 hCG_2014768A0A024R1R8 64 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 CCDC160A6NGH7 325 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 MANSC4A6NHS7 340 aaPredicted RBP11.68□□□□□ -0.54
LSM3-201ENST00000306024 BTBD19C9JJ37 291 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 E9PMD0 336 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 EIF3BP55884 814 aaKnown RBP11.68□□□□□ -0.54
LSM3-201ENST00000306024 CACNB1Q02641 598 aaPredicted RBP11.68□□□□□ -0.54
LSM3-201ENST00000306024 ZNF844Q08AG5 666 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 KLHL30Q0D2K2 578 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 BLMHQ13867 455 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 LRRC14Q15048 493 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 TRADDQ15628 312 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 MOXD1Q6UVY6 613 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 VPS36Q86VN1 386 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 HOMEZQ8IX15 550 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 PIGOQ8TEQ8 1089 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 BEGAINQ9BUH8 593 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 RAB17Q9H0T7 212 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 BHMT2Q9H2M3 363 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 EBF2Q9HAK2 575 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 MLXIPLQ9NP71 852 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 PXMP2Q9NR77 195 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 MAP3K20Q9NYL2 800 aaKnown RBP11.68□□□□□ -0.54
LSM3-201ENST00000306024 RASAL2Q9UJF2 1139 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 MYH4Q9Y623 1939 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 PGRMC1O00264 195 aaKnown RBP11.68□□□□□ -0.54
LSM3-201ENST00000306024 RTN3O95197 1032 aaPredicted RBP11.68□□□□□ -0.54
LSM3-201ENST00000306024 HSPA9P38646 679 aaKnown RBP11.68□□□□□ -0.54
LSM3-201ENST00000306024 ERVK-9P63128 1117 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 XKR9Q5GH70 373 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 CNNM4Q6P4Q7 775 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 KSR1Q8IVT5 923 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 DYDC2Q96IM9 177 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 NUDCD1Q96RS6 583 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 GDF3Q9NR23 364 aa11.68□□□□□ -0.54
LSM3-201ENST00000306024 LRRC53A6NM62 1247 aa11.67□□□□□ -0.54
LSM3-201ENST00000306024 FESP07332 822 aa11.67□□□□□ -0.54
LSM3-201ENST00000306024 PLA2G4BP0C869 781 aa11.67□□□□□ -0.54
LSM3-201ENST00000306024 STX2P32856 288 aa11.67□□□□□ -0.54
LSM3-201ENST00000306024 PLTPP55058 493 aa11.67□□□□□ -0.54
LSM3-201ENST00000306024 KIF22Q14807 665 aa11.67□□□□□ -0.54
LSM3-201ENST00000306024 ZC3H18Q86VM9 953 aaKnown RBP11.67□□□□□ -0.54
LSM3-201ENST00000306024 RIOX2Q8IUF8 465 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms