RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TAS2R42Q7RTR8 314 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 RASSF3Q86WH2 238 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 TTC8Q8TAM2 541 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 TRIM9Q9C026 710 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 TRPV6Q9H1D0 765 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 TAF1DQ9H5J8 278 aaPredicted RBP12.16□□□□□ -0.46
USP53-201ENST00000274030 NCAPD2Q15021 1401 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 KPNA7A9QM74 516 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 HSPA8P11142 646 aaKnown RBP12.16□□□□□ -0.46
USP53-201ENST00000274030 COPB2P35606 906 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 NT5C2P49902 561 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 SESN2P58004 480 aaPredicted RBP12.16□□□□□ -0.46
USP53-201ENST00000274030 PPP2R2AP63151 447 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 MTM1Q13496 603 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 BAATQ14032 418 aaPredicted RBP12.16□□□□□ -0.46
USP53-201ENST00000274030 ADA2Q9NZK5 511 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 DAGLAQ9Y4D2 1042 aa12.16□□□□□ -0.46
USP53-201ENST00000274030 DPYSL4O14531 572 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 EEF1DP29692 281 aaKnown RBP12.15□□□□□ -0.46
USP53-201ENST00000274030 CHRNA3P32297 505 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 EPHA7Q15375 998 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 FASTKD1Q53R41 847 aaKnown RBP12.15□□□□□ -0.46
USP53-201ENST00000274030 RGS9BPQ6ZS82 235 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 USP49Q70CQ1 688 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 APOBEC3FQ8IUX4 373 aaKnown RBP12.15□□□□□ -0.46
USP53-201ENST00000274030 TBC1D16Q8TBP0 767 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 URGCPQ8TCY9 931 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 RNPC3Q96LT9 517 aaKnown RBP12.15□□□□□ -0.46
USP53-201ENST00000274030 AGPAT1Q99943 283 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 BFARQ9NZS9 450 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 PIN4Q9Y237 131 aaKnown RBP12.15□□□□□ -0.46
USP53-201ENST00000274030 KIF1BO60333 1816 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 CTSHP09668 335 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 SETSIPP0DME0 302 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 RARBP10826 455 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 TYK2P29597 1187 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 RCAN1P53805 252 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 KRT17Q04695 432 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 NUDCD3Q8IVD9 361 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 SP8Q8IXZ3 490 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 LBHD1Q9BQE6 289 aaPredicted RBP12.15□□□□□ -0.46
USP53-201ENST00000274030 NDFIP2Q9NV92 336 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 MTMR4Q9NYA4 1195 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 DONSONQ9NYP3 566 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 CAPN11Q9UMQ6 739 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 EYA4O95677 639 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 EXOSC10Q01780 885 aaKnown RBP12.15□□□□□ -0.46
USP53-201ENST00000274030 RFFLQ8WZ73 363 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 RMDN1Q96DB5 314 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 MAP3K4Q9Y6R4 1608 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 GMNCA6NCL1 334 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 SH3BGRP55822 239 aaPredicted RBP12.15□□□□□ -0.46
USP53-201ENST00000274030 LRRC37BQ96QE4 947 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 LRRC1Q9BTT6 524 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 SENP2Q9HC62 589 aa12.15□□□□□ -0.46
USP53-201ENST00000274030 DNAJC8O75937 253 aaPredicted RBP12.15□□□□□ -0.47
USP53-201ENST00000274030 HAUS5O94927 633 aa12.15□□□□□ -0.47
USP53-201ENST00000274030 PRKCBP05771 671 aa12.15□□□□□ -0.47
USP53-201ENST00000274030 PDHA1P08559 390 aa12.15□□□□□ -0.47
USP53-201ENST00000274030 BTBD8Q5XKL5 378 aa12.15□□□□□ -0.47
USP53-201ENST00000274030 SPATA4Q8NEY3 305 aa12.15□□□□□ -0.47
USP53-201ENST00000274030 ACAP3Q96P50 834 aa12.15□□□□□ -0.47
USP53-201ENST00000274030 FAM118BQ9BPY3 351 aa12.15□□□□□ -0.47
USP53-201ENST00000274030 WNT8AQ9H1J5 351 aa12.15□□□□□ -0.47
USP53-201ENST00000274030 AGPAT5Q9NUQ2 364 aa12.15□□□□□ -0.47
USP53-201ENST00000274030 FGFR1OP2Q9NVK5 253 aa12.15□□□□□ -0.47
USP53-201ENST00000274030 TRIM10Q9UDY6 481 aa12.15□□□□□ -0.47
USP53-201ENST00000274030 AGAP1Q9UPQ3 857 aa12.15□□□□□ -0.47
USP53-201ENST00000274030 CFAP69A5D8W1 941 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 NDUFB10O96000 172 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 ADRA2BP18089 450 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 COBLL1Q53SF7 1204 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 ELMOD1Q8N336 334 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 ZNF507Q8TCN5 953 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 SNF8Q96H20 258 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 TMEM60Q9H2L4 133 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 SFMBT1Q9UHJ3 866 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 SNX9Q9Y5X1 595 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 ARFIP2P53365 341 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 TMED1Q13445 227 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 FSCBQ5H9T9 825 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 ARL8AQ96BM9 186 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 PARVAQ9NVD7 372 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 FLT1P17948 1338 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 CAV1Q03135 178 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 AP1ARQ63HQ0 302 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 MICALL2Q8IY33 904 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 RNF168Q8IYW5 571 aaPredicted RBP12.14□□□□□ -0.47
USP53-201ENST00000274030 FAM161BQ96MY7 647 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 POLR3CQ9BUI4 534 aaPredicted RBP12.14□□□□□ -0.47
USP53-201ENST00000274030 PIDD1Q9HB75 910 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 HSPBP1Q9NZL4 362 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 WARS2Q9UGM6 360 aaKnown RBP12.14□□□□□ -0.47
USP53-201ENST00000274030 HERC5Q9UII4 1024 aaKnown RBP12.14□□□□□ -0.47
USP53-201ENST00000274030 PNPLA7Q6ZV29 1317 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 GRAP2O75791 330 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 GGPS1O95749 300 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 PDGFRBP09619 1106 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 ACTN3Q08043 901 aaPredicted RBP12.14□□□□□ -0.47
USP53-201ENST00000274030 REEP2Q9BRK0 252 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms