RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 LIG4P49917 911 aa13.98□□□□□ -0.17
SS18-202ENST00000269138 ZNF568Q3ZCX4 644 aa13.98□□□□□ -0.17
SS18-202ENST00000269138 MPZL3Q6UWV2 235 aa13.98□□□□□ -0.17
SS18-202ENST00000269138 TMEM192Q8IY95 271 aa13.98□□□□□ -0.17
SS18-202ENST00000269138 CEP120Q8N960 986 aa13.98□□□□□ -0.17
SS18-202ENST00000269138 SP7Q8TDD2 431 aaPredicted RBP13.98□□□□□ -0.17
SS18-202ENST00000269138 HVCN1Q96D96 273 aa13.98□□□□□ -0.17
SS18-202ENST00000269138 PGBD4Q96DM1 585 aa13.98□□□□□ -0.17
SS18-202ENST00000269138 ACCSQ96QU6 501 aa13.98□□□□□ -0.17
SS18-202ENST00000269138 ADPGKQ9BRR6 497 aa13.98□□□□□ -0.17
SS18-202ENST00000269138 SNTG2Q9NY99 539 aa13.98□□□□□ -0.17
SS18-202ENST00000269138 LINC01553A4QN01 128 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 OFD1O75665 1012 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 FXR1P51114 621 aaKnown RBP eCLIP13.97□□□□□ -0.17
SS18-202ENST00000269138 OSTNP61366 133 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 TAP1Q03518 808 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 BTG3Q14201 252 aaPredicted RBP13.97□□□□□ -0.17
SS18-202ENST00000269138 DCAF4L1Q3SXM0 396 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 SEZ6Q53EL9 994 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 LRRC55Q6ZSA7 311 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 KIAA0895Q8NCT3 520 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 ZNF507Q8TCN5 953 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 SCFD1Q8WVM8 642 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 CCDC34Q96HJ3 373 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 TMEM117Q9H0C3 514 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 CXCL16Q9H2A7 254 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 RNF216Q9NWF9 866 aaPredicted RBP13.97□□□□□ -0.17
SS18-202ENST00000269138 KLK14Q9P0G3 267 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 PARP2Q9UGN5 583 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 INPP5FQ9Y2H2 1132 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 GDAQ9Y2T3 454 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 PCDHA5Q9Y5H7 936 aa13.97□□□□□ -0.17
SS18-202ENST00000269138 CLDN3O15551 220 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 RHOBTB3O94955 611 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 MCF2P10911 925 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 ABCD1P33897 745 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 MATR3P43243 847 aaKnown RBP eCLIP13.96□□□□□ -0.179e-6■■■■□ 21.7
SS18-202ENST00000269138 MCL1Q07820 350 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 ALCAMQ13740 583 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 NOLC1Q14978 699 aaKnown RBP eCLIP13.96□□□□□ -0.17
SS18-202ENST00000269138 CAMK4Q16566 473 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 PPP2R2DQ66LE6 453 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 NELFCDQ8IXH7 590 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 ELOA2Q8IYF1 753 aaPredicted RBP13.96□□□□□ -0.17
SS18-202ENST00000269138 THNSL1Q8IYQ7 743 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 CMTR2Q8IYT2 770 aaKnown RBP13.96□□□□□ -0.17
SS18-202ENST00000269138 SYCP3Q8IZU3 236 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 FIBCD1Q8N539 461 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 GPT2Q8TD30 523 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 ZFP42Q96MM3 310 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 GAD1Q99259 594 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 CERS4Q9HA82 394 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 RSAD1Q9HA92 442 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 MIOSQ9NXC5 875 aa13.96□□□□□ -0.17
SS18-202ENST00000269138 MRPL42Q9Y6G3 142 aaKnown RBP13.96□□□□□ -0.17
SS18-202ENST00000269138 GBF1Q92538 1859 aa13.96□□□□□ -0.18
SS18-202ENST00000269138 ZMYM2Q9UBW7 1377 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 A0A0B4J269 797 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 ARL5CA6NH57 179 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 GOLGA6L22H0YM25 854 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 EIF3DO15371 548 aaKnown RBP eCLIP13.95□□□□□ -0.18
SS18-202ENST00000269138 HOXA2O43364 376 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 RECQL4O94761 1208 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 LINC00271P0C7V0 271 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 ADSSP30520 456 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 MLH1P40692 756 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 GRM5P41594 1212 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 PSMD2Q13200 908 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 KCNB1Q14721 858 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 NOMO2Q5JPE7 1267 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 ZBTB41Q5SVQ8 909 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 GLB1LQ6UWU2 654 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 STXBP4Q6ZWJ1 553 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 ABI1Q8IZP0 508 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 SPATA20Q8TB22 786 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 SMARCE1Q969G3 411 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 CCDC47Q96A33 483 aaKnown RBP13.95□□□□□ -0.18
SS18-202ENST00000269138 TTYH1Q9H313 450 aaPredicted RBP13.95□□□□□ -0.18
SS18-202ENST00000269138 SLC28A3Q9HAS3 691 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 TYW1Q9NV66 732 aaKnown RBP13.95□□□□□ -0.18
SS18-202ENST00000269138 EXOC7Q9UPT5 735 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 MEFVO15553 781 aaPredicted RBP13.95□□□□□ -0.18
SS18-202ENST00000269138 TGFB1I1O43294 461 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 SMC2O95347 1197 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 MCM4P33991 863 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 BMT2Q1RMZ1 405 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 ISM2Q6H9L7 571 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 Q7L0L9 218 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 APBB1IPQ7Z5R6 666 aaPredicted RBP13.95□□□□□ -0.18
SS18-202ENST00000269138 SMYD4Q8IYR2 804 aaPredicted RBP13.95□□□□□ -0.18
SS18-202ENST00000269138 HACE1Q8IYU2 909 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 GSTCDQ8NEC7 633 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 ZSWIM2Q8NEG5 633 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 C17orf80Q9BSJ5 609 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 MSTO1Q9BUK6 570 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 ZNF576Q9H609 170 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 CWH43Q9H720 699 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 TMEM206Q9H813 350 aa13.95□□□□□ -0.18
SS18-202ENST00000269138 HOOK1Q9UJC3 728 aaKnown RBP13.95□□□□□ -0.18
SS18-202ENST00000269138 MTUS1Q9ULD2 1270 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms