RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 SERPINB3P29508 390 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 POLGP54098 1239 aaPredicted RBP9.38□□□□□ -0.91
VAPB-201ENST00000265619 EIF6P56537 245 aaKnown RBP9.38□□□□□ -0.91
VAPB-201ENST00000265619 ASIC1P78348 528 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 DR1Q01658 176 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 TAF1BQ53T94 588 aaPredicted RBP9.38□□□□□ -0.91
VAPB-201ENST00000265619 WASHC2DQ5SRD0 308 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 INTS8Q75QN2 995 aaKnown RBP9.38□□□□□ -0.91
VAPB-201ENST00000265619 RASGEF1CQ8N431 466 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 SLC44A5Q8NCS7 719 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 BRD8Q9H0E9 1235 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 BARX2Q9UMQ3 279 aaPredicted RBP9.38□□□□□ -0.91
VAPB-201ENST00000265619 GMEB1Q9Y692 573 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 PLCG1P19174 1290 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 TM4SF1P30408 202 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 GJA8P48165 433 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 LLGL1Q15334 1064 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 ZNF365Q70YC5 407 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 SH3TC2Q8TF17 1288 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 TRIM9Q9C026 710 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 PDP2Q9P2J9 529 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 STOML1Q9UBI4 398 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 POLLQ9UGP5 575 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 PPP1R9AQ9ULJ8 1098 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 CCDC88AQ3V6T2 1871 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 TRIM43BA6NCK2 446 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 STK10O94804 968 aaKnown RBP9.38□□□□□ -0.91
VAPB-201ENST00000265619 YY1P25490 414 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 EMP3P54852 163 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 KBTBD12Q3ZCT8 623 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 ZNF280DQ6N043 979 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 TTC27Q6P3X3 843 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 JAMLQ86YT9 394 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 HSPBAP1Q96EW2 488 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 SLITRK6Q9H5Y7 841 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 KCNQ5Q9NR82 932 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 ZNF180Q9UJW8 692 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 NID2Q14112 1375 aa9.38□□□□□ -0.91
VAPB-201ENST00000265619 COL6A2P12110 1019 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 WDR4P57081 412 aaKnown RBP9.37□□□□□ -0.91
VAPB-201ENST00000265619 TCP10Q12799 353 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 MAN2A1Q16706 1144 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 HS2ST1Q7LGA3 356 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 PEX26Q7Z412 305 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 NT5DC3Q86UY8 548 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 NLGN1Q8N2Q7 840 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 SMYD1Q8NB12 490 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 PITPNM3Q9BZ71 974 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 ASCC2Q9H1I8 757 aaPredicted RBP9.37□□□□□ -0.91
VAPB-201ENST00000265619 TBC1D7Q9P0N9 293 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 AJAP1Q9UKB5 411 aaPredicted RBP9.37□□□□□ -0.91
VAPB-201ENST00000265619 ZNF711Q9Y462 761 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 SLC4A7Q9Y6M7 1214 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 COMMD3-BMI1R4GMX3 469 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 TCRBV5S4A2TA0A5A2 114 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 TSPY2A6NKD2 308 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 ATMINO43313 823 aaPredicted RBP9.37□□□□□ -0.91
VAPB-201ENST00000265619 ZNF862O60290 1169 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 PSMG1O95456 288 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 VIL1P09327 827 aaKnown RBP9.37□□□□□ -0.91
VAPB-201ENST00000265619 CDK7P50613 346 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 KLHL30Q0D2K2 578 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 SETDB1Q15047 1291 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 PLEKHG4Q58EX7 1191 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 KIAA1755Q5JYT7 1200 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 DAB2IPQ5VWQ8 1189 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 LRRC55Q6ZSA7 311 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 SLF2Q8IX21 1173 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 ARHGAP18Q8N392 663 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.37□□□□□ -0.91
VAPB-201ENST00000265619 LRRC37BQ96QE4 947 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 ZNF184Q99676 751 aaPredicted RBP9.37□□□□□ -0.91
VAPB-201ENST00000265619 ADAM33Q9BZ11 813 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 MKNK2Q9HBH9 465 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 STX8Q9UNK0 236 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 IGSF9BQ9UPX0 1349 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 CCDC188H7C350 402 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 DDX3XO00571 662 aaKnown RBP eCLIP9.37□□□□□ -0.915e-9■□□□□ 8.7
VAPB-201ENST00000265619 EXOC3O60645 756 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 CCDC166P0CW27 439 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 HARSP12081 509 aaKnown RBP9.37□□□□□ -0.91
VAPB-201ENST00000265619 BRAFP15056 766 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 SLC34A1Q06495 639 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 AP1B1Q10567 949 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 MOGSQ13724 837 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.37□□□□□ -0.91
VAPB-201ENST00000265619 TMEM63BQ5T3F8 832 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 CENPPQ6IPU0 288 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 PHLDB3Q6NSJ2 640 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 IZUMO2Q6UXV1 221 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 RNF26Q9BY78 433 aaPredicted RBP9.37□□□□□ -0.91
VAPB-201ENST00000265619 FGFBP2Q9BYJ0 223 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 EBF3Q9H4W6 596 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 TMOD4Q9NZQ9 345 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 CEP72Q9P209 647 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 RGS17Q9UGC6 210 aaPredicted RBP9.37□□□□□ -0.91
VAPB-201ENST00000265619 SUN2Q9UH99 717 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 TMEM98Q9Y2Y6 226 aa9.37□□□□□ -0.91
VAPB-201ENST00000265619 FLT1P17948 1338 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 TCRBV7S2A1N4TA0A589 114 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms