RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 KCNG1Q9UIX4 513 aa12.05□□□□□ -0.48
MSH3-201ENST00000265081 TELO2Q9Y4R8 837 aa12.05□□□□□ -0.48
MSH3-201ENST00000265081 POLR2AP24928 1970 aaKnown RBP12.04□□□□□ -0.48
MSH3-201ENST00000265081 TNFAIP3P21580 790 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 CTNNA1P35221 906 aaKnown RBP12.04□□□□□ -0.48
MSH3-201ENST00000265081 SMTNP53814 917 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 TRADDQ15628 312 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 TARBP2Q15633 366 aaKnown RBP12.04□□□□□ -0.48
MSH3-201ENST00000265081 XKR9Q5GH70 373 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 CHST13Q8NET6 341 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 NEUROG2Q9H2A3 272 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 ZDHHC18Q9NUE0 388 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 SLC9A2Q9UBY0 812 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 A6NNZ2 444 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 GPC5P78333 572 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 CDR2Q01850 454 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 SP2Q02086 613 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 PSMD6Q15008 389 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 SIX1Q15475 284 aaPredicted RBP12.04□□□□□ -0.48
MSH3-201ENST00000265081 TUBB8Q3ZCM7 444 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 DUPD1Q68J44 220 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 RPUSD2Q8IZ73 545 aaKnown RBP12.04□□□□□ -0.48
MSH3-201ENST00000265081 UBR7Q8N806 425 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 SLCO2A1Q92959 643 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 PCYOX1Q9UHG3 505 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 IRF6O14896 467 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 SGPL1O95470 568 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 UNGP13051 313 aaPredicted RBP12.04□□□□□ -0.48
MSH3-201ENST00000265081 PTGIRP43119 386 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 MFAP3P55082 362 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 ZSCAN26Q16670 478 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 ZNF568Q3ZCX4 644 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 KDM7AQ6ZMT4 941 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 GPD1LQ8N335 351 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 ALG3Q92685 438 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 ZKSCAN4Q969J2 545 aaPredicted RBP12.04□□□□□ -0.48
MSH3-201ENST00000265081 ZSWIM1Q9BR11 485 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 KIAA1586Q9HCI6 787 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 HOMER2Q9NSB8 354 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 PKD2L1Q9P0L9 805 aa12.04□□□□□ -0.48
MSH3-201ENST00000265081 SCAF8Q9UPN6 1271 aaKnown RBP12.04□□□□□ -0.48
MSH3-201ENST00000265081 DENND3A2RUS2 1198 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 ITGA4P13612 1032 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 HSPA6P17066 643 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 MATR3P43243 847 aaKnown RBP eCLIP12.03□□□□□ -0.48
MSH3-201ENST00000265081 ACTR2P61160 394 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 FAM102BQ5T8I3 360 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 ZNF677Q86XU0 584 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 CCDC125Q86Z20 511 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 KAT5Q92993 513 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 ATP6V0A4Q9HBG4 840 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 KMT5AQ9NQR1 393 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 GABBR1Q9UBS5 961 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 GTF3C4Q9UKN8 822 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 FAM189A1O60320 539 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 MYCLP12524 364 aaPredicted RBP12.03□□□□□ -0.48
MSH3-201ENST00000265081 NOP2P46087 812 aaKnown RBP12.03□□□□□ -0.48
MSH3-201ENST00000265081 DHX34Q14147 1143 aaKnown RBP12.03□□□□□ -0.48
MSH3-201ENST00000265081 ENOX2Q16206 610 aaKnown RBP12.03□□□□□ -0.48
MSH3-201ENST00000265081 CRELD2Q6UXH1 353 aaPredicted RBP12.03□□□□□ -0.48
MSH3-201ENST00000265081 FBXL13Q8NEE6 735 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 PSPC1Q8WXF1 523 aaKnown RBP12.03□□□□□ -0.48
MSH3-201ENST00000265081 ZNF516Q92618 1163 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 PAGR1Q9BTK6 254 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 HAPLN2Q9GZV7 340 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 GPRC5DQ9NZD1 345 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 A0A0U1RQG5 324 aaPredicted RBP12.03□□□□□ -0.48
MSH3-201ENST00000265081 FAM187AA6NFU0 413 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 EXTL3O43909 919 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 CEP104O60308 925 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 PPFIA2O75334 1257 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 C4BPAP04003 597 aaKnown RBP12.03□□□□□ -0.48
MSH3-201ENST00000265081 IVLP07476 585 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 CYP11B1P15538 503 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 PRKCEQ02156 737 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 GRM1Q13255 1194 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 TBC1D10BQ4KMP7 808 aaPredicted RBP12.03□□□□□ -0.48
MSH3-201ENST00000265081 XKR3Q5GH77 459 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 WRNIP1Q96S55 665 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 NAP1L3Q99457 506 aaPredicted RBP12.03□□□□□ -0.48
MSH3-201ENST00000265081 FAM129AQ9BZQ8 928 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 WNT8AQ9H1J5 351 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 PORCNQ9H237 461 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 RAB20Q9NX57 234 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 UVRAGQ9P2Y5 699 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 SAMM50Q9Y512 469 aa12.03□□□□□ -0.48
MSH3-201ENST00000265081 ATXN2Q99700 1313 aaKnown RBP12.03□□□□□ -0.48
MSH3-201ENST00000265081 FTLP02792 175 aaPredicted RBP12.02□□□□□ -0.48
MSH3-201ENST00000265081 LMAN1P49257 510 aa12.02□□□□□ -0.48
MSH3-201ENST00000265081 RNPC3Q96LT9 517 aaKnown RBP12.02□□□□□ -0.48
MSH3-201ENST00000265081 TMEM134Q9H6X4 195 aa12.02□□□□□ -0.48
MSH3-201ENST00000265081 AVENQ9NQS1 362 aaPredicted RBP12.02□□□□□ -0.48
MSH3-201ENST00000265081 ALG6Q9Y672 507 aa12.02□□□□□ -0.48
MSH3-201ENST00000265081 SNCAIPQ9Y6H5 919 aa12.02□□□□□ -0.48
MSH3-201ENST00000265081 PLXNA1Q9UIW2 1896 aa12.02□□□□□ -0.48
MSH3-201ENST00000265081 TESPA1A2RU30 521 aaPredicted RBP12.02□□□□□ -0.49
MSH3-201ENST00000265081 HSF2BPO75031 334 aa12.02□□□□□ -0.49
MSH3-201ENST00000265081 CYP1A1P04798 512 aaPredicted RBP12.02□□□□□ -0.49
MSH3-201ENST00000265081 MRPS25P82663 173 aaKnown RBP12.02□□□□□ -0.49
MSH3-201ENST00000265081 CLEC16AQ2KHT3 1053 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms