RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 FMO5P49326 533 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 DRP2Q13474 957 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 ZNF772Q68DY9 489 aaPredicted RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 SYDE1Q6ZW31 735 aaPredicted RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 HIPK4Q8NE63 616 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 MS4A14Q96JA4 679 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 ERGIC2Q96RQ1 377 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 L2HGDHQ9H9P8 463 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 CEMIPQ8WUJ3 1361 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 FLT1P17948 1338 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 STXBP3O00186 592 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 KRT10P13645 584 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 XPAP23025 273 aaPredicted RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 SMARCA1P28370 1054 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 HSPA9P38646 679 aaKnown RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 PHEXP78562 749 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 CDR2Q01850 454 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 TMTC4Q5T4D3 741 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 LRIG3Q6UXM1 1119 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 WRNIP1Q96S55 665 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 EPN3Q9H201 632 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 VPS11Q9H270 941 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 AGLP35573 1532 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 HUS1O60921 280 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 CDH16O75309 829 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 SLC4A1P02730 911 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 PAPOLAP51003 745 aaKnown RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 IL1RL1Q01638 556 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 NFX1Q12986 1120 aaKnown RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 PDIA6Q15084 440 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 TMCO4Q5TGY1 634 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 HEATR6Q6AI08 1181 aaKnown RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 ZC3H18Q86VM9 953 aaKnown RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 RYBPQ8N488 228 aaPredicted RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 SH2D3CQ8N5H7 860 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 PIP4K2CQ8TBX8 421 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 SCG3Q8WXD2 468 aaKnown RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 REEP2Q9BRK0 252 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 BFARQ9NZS9 450 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 M0QYV0 167 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 EIF3HO15372 352 aaKnown RBP eCLIP11.42□□□□□ -0.58
CD44-201ENST00000263398 SLC12A1Q13621 1099 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 SLC35G2Q8TBE7 412 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 HNRNPLLQ8WVV9 542 aaKnown RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 FGD4Q96M96 766 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 CCT8L2Q96SF2 557 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 KCND2Q9NZV8 630 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.42□□□□□ -0.58
CD44-201ENST00000263398 NYAP2Q9P242 653 aa11.42□□□□□ -0.58
CD44-201ENST00000263398 KCNQ2O43526 872 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 RASA1P20936 1047 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 EPHB1P54762 984 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 COPS2P61201 443 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 TROAPQ12815 778 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 TSTA3Q13630 321 aaPredicted RBP11.41□□□□□ -0.58
CD44-201ENST00000263398 NKX1-1Q15270 411 aaPredicted RBP11.41□□□□□ -0.58
CD44-201ENST00000263398 RWDD4Q6NW29 188 aaKnown RBP11.41□□□□□ -0.58
CD44-201ENST00000263398 ACAD11Q709F0 780 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 NOA1Q8NC60 698 aaKnown RBP11.41□□□□□ -0.58
CD44-201ENST00000263398 BEST2Q8NFU1 509 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 BTBD6Q96KE9 485 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 RBM12Q9NTZ6 932 aaKnown RBP11.41□□□□□ -0.58
CD44-201ENST00000263398 FNDC3AQ9Y2H6 1198 aaKnown RBP11.41□□□□□ -0.58
CD44-201ENST00000263398 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.41□□□□□ -0.58
CD44-201ENST00000263398 PITPNM2Q9BZ72 1349 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 PPP1R3GB7ZBB8 358 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 ACTN3Q08043 901 aaPredicted RBP11.41□□□□□ -0.58
CD44-201ENST00000263398 PTPAQ15257 358 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 C1orf146Q5VVC0 180 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 TRMT10CQ7L0Y3 403 aaKnown RBP11.41□□□□□ -0.58
CD44-201ENST00000263398 NUDCD3Q8IVD9 361 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 CENPKQ9BS16 269 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 BEGAINQ9BUH8 593 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 ACAD9Q9H845 621 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 PSD3Q9NYI0 1048 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 SUN2Q9UH99 717 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 HPCAL4Q9UM19 191 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 NPHP3-ACAD11A0A0J9YXS1 232 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 NDUFB10O96000 172 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 APOEP02649 317 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 ARSEP51690 589 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 EFNA5P52803 228 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 ROR1Q01973 937 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 GRIN1Q05586 938 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 HP1BP3Q5SSJ5 553 aaPredicted RBP11.41□□□□□ -0.58
CD44-201ENST00000263398 FAM102AQ5T9C2 384 aaPredicted RBP11.41□□□□□ -0.58
CD44-201ENST00000263398 RBM43Q6ZSC3 357 aaKnown RBP11.41□□□□□ -0.58
CD44-201ENST00000263398 PARP9Q8IXQ6 854 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 LRRC43Q8N309 656 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 KCTD17Q8N5Z5 321 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 TRIML2Q8N7C3 387 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 MKNK1Q9BUB5 465 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 C1orf167Q5SNV9 1468 aa11.41□□□□□ -0.58
CD44-201ENST00000263398 GSTA4O15217 222 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 ASAP2O43150 1006 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 PHF2O75151 1096 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 DGAT1O75907 488 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 PDHBP11177 359 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 ITIH2P19823 946 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 FGFR4P22455 802 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms