RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 HSPBP1Q9NZL4 362 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 PASKQ96RG2 1323 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 SMCHD1A6NHR9 2005 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 IGLV3-22A0A075B6J6 115 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 PPFIA2O75334 1257 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 ECEL1O95672 775 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 NPR1P16066 1061 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 EIF2AK2P19525 551 aaKnown RBP13.57□□□□□ -0.24
LIG1-201ENST00000263274 DRD4P21917 467 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 ADCY8P40145 1251 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 C6orf118Q5T5N4 469 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 SEPT14Q6ZU15 432 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 INTS8Q75QN2 995 aaKnown RBP13.57□□□□□ -0.24
LIG1-201ENST00000263274 GSTA5Q7RTV2 222 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 HAUS6Q7Z4H7 955 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 CBWD2Q8IUF1 395 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 KIRREL3Q8IZU9 778 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 MKNK1Q9BUB5 465 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 MTFR1LQ9H019 292 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 CCPG1Q9ULG6 757 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 MRPL11Q9Y3B7 192 aaKnown RBP13.57□□□□□ -0.24
LIG1-201ENST00000263274 EZRP15311 586 aaKnown RBP13.57□□□□□ -0.24
LIG1-201ENST00000263274 ANXA13P27216 316 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 CIITAP33076 1130 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 SOX10P56693 466 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 KYNUQ16719 465 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 PLA2G4FQ68DD2 849 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 LLGL2Q6P1M3 1020 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 NOP9Q86U38 636 aaKnown RBP13.57□□□□□ -0.24
LIG1-201ENST00000263274 FUKQ8N0W3 1084 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 ARHGEF2Q92974 986 aaKnown RBP13.57□□□□□ -0.24
LIG1-201ENST00000263274 BORCS6Q96GS4 357 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 ACCSQ96QU6 501 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 ANAPC7Q9UJX3 599 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 USP20Q9Y2K6 914 aa13.57□□□□□ -0.24
LIG1-201ENST00000263274 MIF4GDA9UHW6 222 aaKnown RBP13.56□□□□□ -0.24
LIG1-201ENST00000263274 RAD17O75943 681 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 RARAP10276 462 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 CREB1P16220 341 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 VCAM1P19320 739 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 GBP2P32456 591 aaPredicted RBP13.56□□□□□ -0.24
LIG1-201ENST00000263274 CYP4F22Q6NT55 531 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 LDHDQ86WU2 507 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 RNF217Q8TC41 542 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 CHURC1Q8WUH1 139 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 ZKSCAN4Q969J2 545 aaPredicted RBP13.56□□□□□ -0.24
LIG1-201ENST00000263274 FAM129AQ9BZQ8 928 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 PRDM16Q9HAZ2 1276 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 CTNNAL1Q9UBT7 734 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 ODF2LQ9ULJ1 636 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 RREB1Q92766 1687 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 TESPA1A2RU30 521 aaPredicted RBP13.56□□□□□ -0.24
LIG1-201ENST00000263274 TCP11X1B4DZS4 312 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 PODXLO00592 558 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 ONECUT3O60422 494 aaPredicted RBP13.56□□□□□ -0.24
LIG1-201ENST00000263274 RTN2O75298 545 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 MAPK4P31152 587 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 PDE6CP51160 858 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 ERMARDQ5T6L9 678 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 TAOK1Q7L7X3 1001 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 TAB3Q8N5C8 712 aaPredicted RBP13.56□□□□□ -0.24
LIG1-201ENST00000263274 CRYGNQ8WXF5 182 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 TACO1Q9BSH4 297 aaKnown RBP13.56□□□□□ -0.24
LIG1-201ENST00000263274 GPR88Q9GZN0 384 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 NSRP1Q9H0G5 558 aaKnown RBP13.56□□□□□ -0.24
LIG1-201ENST00000263274 FGFR1OP2Q9NVK5 253 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 SEL1LQ9UBV2 794 aa13.56□□□□□ -0.24
LIG1-201ENST00000263274 DIS3Q9Y2L1 958 aaKnown RBP13.56□□□□□ -0.24
LIG1-201ENST00000263274 CCT8L1PA6NM43 557 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 THAP12O43422 761 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 COILP38432 576 aaPredicted RBP13.55□□□□□ -0.24
LIG1-201ENST00000263274 RWDD2BP57060 319 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 POU5F1Q01860 360 aaKnown RBP13.55□□□□□ -0.24
LIG1-201ENST00000263274 KRT17Q04695 432 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 ADCY2Q08462 1091 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 C6orf89Q6UWU4 347 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 SLC13A5Q86YT5 568 aaPredicted RBP13.55□□□□□ -0.24
LIG1-201ENST00000263274 PASD1Q8IV76 773 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 EIF1ADQ8N9N8 165 aaKnown RBP13.55□□□□□ -0.24
LIG1-201ENST00000263274 ZDHHC18Q9NUE0 388 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 PARP2Q9UGN5 583 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 TPX2Q9ULW0 747 aaKnown RBP13.55□□□□□ -0.24
LIG1-201ENST00000263274 CHRNA5P30532 468 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 RASA3Q14644 834 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 KAZNQ674X7 775 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 ZDHHC24Q6UX98 284 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 YTHDF3Q7Z739 585 aaKnown RBP13.55□□□□□ -0.24
LIG1-201ENST00000263274 ZDHHC14Q8IZN3 488 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 KIF2BQ8N4N8 673 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 CPA5Q8WXQ8 436 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 GMCL1Q96IK5 515 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 TRIM7Q9C029 511 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 NCANO14594 1321 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 HARSP12081 509 aaKnown RBP13.55□□□□□ -0.24
LIG1-201ENST00000263274 PDE6BP35913 854 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 BIRC2Q13490 618 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 NEDD9Q14511 834 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 CC2D2BQ6DHV5 1058 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 FAM47EQ6ZV65 393 aa13.55□□□□□ -0.24
LIG1-201ENST00000263274 PRUNE1Q86TP1 453 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms