RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 EYA4O95677 639 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 MXD4Q14582 209 aaPredicted RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 PDXDC1Q6P996 788 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 RHPN2Q8IUC4 686 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 ZNF564Q8TBZ8 553 aaPredicted RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 LSM7Q9UK45 103 aaKnown RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 A0A1B0GTH6 734 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 E5RI56 91 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 HP1BP3Q5SSJ5 553 aaPredicted RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 TAF1DQ9H5J8 278 aaPredicted RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 TULP4Q9NRJ4 1543 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 EFCAB14O75071 495 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 FMR1Q06787 632 aaKnown RBP eCLIP20.28■□□□□ 0.841e-6■■■■□ 23.8
UPF1-201ENST00000262803 MKRN3Q13064 507 aaKnown RBP20.28■□□□□ 0.84
UPF1-201ENST00000262803 TMCO4Q5TGY1 634 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 ZNF746Q6NUN9 644 aaPredicted RBP20.28■□□□□ 0.84
UPF1-201ENST00000262803 XRRA1Q6P2D8 792 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 ANKS3Q6ZW76 656 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 THOC1Q96FV9 657 aaKnown RBP20.28■□□□□ 0.84
UPF1-201ENST00000262803 ASPSCR1Q9BZE9 553 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 JCADQ9P266 1359 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 FAM205CA6NFA0 338 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 KCNJ6P48051 423 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 PMS2P54278 862 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 PSMC1P62191 440 aaKnown RBP20.28■□□□□ 0.84
UPF1-201ENST00000262803 TRADDQ15628 312 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 FAM47EQ6ZV65 393 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 IGDCC4Q8TDY8 1250 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 AFG1LQ8WV93 481 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 TRIM9Q9C026 710 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 G3BP2Q9UN86 482 aaKnown RBP20.28■□□□□ 0.84
UPF1-201ENST00000262803 CROCC2H7BZ55 1655 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 FTLP02792 175 aaPredicted RBP20.28■□□□□ 0.84
UPF1-201ENST00000262803 ROR1Q01973 937 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 SWSAP1Q6NVH7 229 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 TRIM4Q9C037 500 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 SCOCQ9UIL1 159 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 FIS1Q9Y3D6 152 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 BNIP3LO60238 219 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 TMPRSS15P98073 1019 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 CDC26Q8NHZ8 85 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 EPAS1Q99814 870 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 TMEM106CQ9BVX2 250 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 NUP85Q9BW27 656 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 CCSER1Q9C0I3 900 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 PARVAQ9NVD7 372 aa20.28■□□□□ 0.84
UPF1-201ENST00000262803 GLYCTKQ8IVS8 523 aa20.27■□□□□ 0.84
UPF1-201ENST00000262803 SPATA4Q8NEY3 305 aa20.27■□□□□ 0.84
UPF1-201ENST00000262803 COG1Q8WTW3 980 aa20.27■□□□□ 0.84
UPF1-201ENST00000262803 TTC17Q96AE7 1141 aa20.27■□□□□ 0.84
UPF1-201ENST00000262803 OTUB1Q96FW1 271 aaPredicted RBP20.27■□□□□ 0.84
UPF1-201ENST00000262803 POLR3CQ9BUI4 534 aaPredicted RBP20.27■□□□□ 0.84
UPF1-201ENST00000262803 MMP14P50281 582 aa20.27■□□□□ 0.84
UPF1-201ENST00000262803 HSD17B4P51659 736 aa20.27■□□□□ 0.84
UPF1-201ENST00000262803 SPP2Q13103 211 aa20.27■□□□□ 0.84
UPF1-201ENST00000262803 STRIP1Q5VSL9 837 aa20.27■□□□□ 0.84
UPF1-201ENST00000262803 STX18Q9P2W9 335 aaKnown RBP20.27■□□□□ 0.84
UPF1-201ENST00000262803 ZNRF3Q9ULT6 936 aa20.27■□□□□ 0.84
UPF1-201ENST00000262803 PPP2R2AP63151 447 aa20.27■□□□□ 0.84
UPF1-201ENST00000262803 C12orf60Q5U649 245 aa20.27■□□□□ 0.84
UPF1-201ENST00000262803 LXNQ9BS40 222 aa20.27■□□□□ 0.84
UPF1-201ENST00000262803 FNDC3AQ9Y2H6 1198 aaKnown RBP20.27■□□□□ 0.84
UPF1-201ENST00000262803 ZBBXA8MT70 800 aa20.27■□□□□ 0.83
UPF1-201ENST00000262803 ALDH1A1P00352 501 aa20.27■□□□□ 0.83
UPF1-201ENST00000262803 RFC5P40937 340 aa20.27■□□□□ 0.83
UPF1-201ENST00000262803 VSNL1P62760 191 aa20.27■□□□□ 0.83
UPF1-201ENST00000262803 KBTBD13C9JR72 458 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 ANP32DO95626 131 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 SLC25A27O95847 323 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 ZNF526Q8TF50 670 aaPredicted RBP20.26■□□□□ 0.83
UPF1-201ENST00000262803 CHP1Q99653 195 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 PHF20Q9BVI0 1012 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 KDM4CQ9H3R0 1056 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 SLC38A7Q9NVC3 462 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 MOSPD1Q9UJG1 213 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 ABCA6Q8N139 1617 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 A0A0G2JND7 137 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 GMNCA6NCL1 334 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 A8MXQ7 604 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 PDXKO00764 312 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 TRIM49P0CI25 452 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 TRIM49CP0CI26 452 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 RNF25Q96BH1 459 aaPredicted RBP20.26■□□□□ 0.83
UPF1-201ENST00000262803 MRPL46Q9H2W6 279 aaKnown RBP20.26■□□□□ 0.83
UPF1-201ENST00000262803 RBAKQ9NYW8 714 aaPredicted RBP20.26■□□□□ 0.83
UPF1-201ENST00000262803 CPB1P15086 417 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 XKR3Q5GH77 459 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 BEND6Q5SZJ8 279 aaPredicted RBP20.26■□□□□ 0.83
UPF1-201ENST00000262803 RNF217Q8TC41 542 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 ARHGEF1Q92888 912 aaKnown RBP20.26■□□□□ 0.83
UPF1-201ENST00000262803 AGO2Q9UKV8 859 aaKnown RBP20.26■□□□□ 0.83
UPF1-201ENST00000262803 SPATA31A6Q5VVP1 1343 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 TNPO2O14787 897 aaKnown RBP20.26■□□□□ 0.83
UPF1-201ENST00000262803 DGAT1O75907 488 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 BCAR1P56945 870 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 ATP11CQ8NB49 1132 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 NCLNQ969V3 563 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 PPCSQ9HAB8 311 aa20.26■□□□□ 0.83
UPF1-201ENST00000262803 EML4Q9HC35 981 aaKnown RBP20.26■□□□□ 0.83
UPF1-201ENST00000262803 STK25O00506 426 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms