RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 GOLGA8MH3BSY2 632 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 DPEP1P16444 411 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 ATP1A2P50993 1020 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 GUCY2FP51841 1108 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 DGKDQ16760 1214 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 TRIM45Q9H8W5 580 aaPredicted RBP13.55□□□□□ -0.24
USP40-201ENST00000251722 ANKEF1Q9NU02 776 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 LRRIQ1Q96JM4 1722 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 ANO9A1A5B4 782 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 MT-ND3P03897 115 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 KRT4P19013 534 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 YWHABP31946 246 aaKnown RBP13.55□□□□□ -0.24
USP40-201ENST00000251722 SOX5P35711 763 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 CDK17Q00537 523 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 MMEL1Q495T6 779 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 SCN4BQ8IWT1 228 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 GDAP1Q8TB36 358 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 GPT2Q8TD30 523 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 PIGOQ8TEQ8 1089 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 LRGUKQ96M69 825 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 FAM213AQ9BRX8 229 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 TSSK1BQ9BXA7 367 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 PRMT7Q9NVM4 692 aaPredicted RBP13.55□□□□□ -0.24
USP40-201ENST00000251722 IFNA8P32881 189 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 PNPLA4P41247 253 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 ATG16L1Q676U5 607 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 RBAKQ9NYW8 714 aaPredicted RBP13.55□□□□□ -0.24
USP40-201ENST00000251722 SUCLA2Q9P2R7 463 aaPredicted RBP13.55□□□□□ -0.24
USP40-201ENST00000251722 STOML1Q9UBI4 398 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 CEMIPQ8WUJ3 1361 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 GOLGA8IPA6NC78 632 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 GOLGA8JA6NMD2 632 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 ARHGEF9O43307 516 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 ARL4CP56559 192 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 EPS15L1Q9UBC2 864 aa13.55□□□□□ -0.24
USP40-201ENST00000251722 HUNKP57058 714 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 SNAP25P60880 206 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 GUCY2DQ02846 1103 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 KRT31Q15323 416 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 DCAF4L1Q3SXM0 396 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 CD302Q8IX05 232 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 MAML3Q96JK9 1138 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 TMEM247A6NEH6 219 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 NDUFB10O96000 172 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 CPB1P15086 417 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 BTBD8Q5XKL5 378 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 ALS2CLQ60I27 953 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 RWDD4Q6NW29 188 aaKnown RBP13.54□□□□□ -0.24
USP40-201ENST00000251722 PPP1R13BQ96KQ4 1090 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 DYRK4Q9NR20 520 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 ERAP1Q9NZ08 941 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 CNOT8Q9UFF9 292 aaKnown RBP13.54□□□□□ -0.24
USP40-201ENST00000251722 A0A1W2PQC6 194 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 KRT37O76014 449 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 SLC1A1P43005 524 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 KIAA2013Q8IYS2 634 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 SPDYE1Q8NFV5 336 aaPredicted RBP13.54□□□□□ -0.24
USP40-201ENST00000251722 TRAIPQ9BWF2 469 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 EHD4Q9H223 541 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 DEPDC5O75140 1603 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 ERO1BQ86YB8 467 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 FBXL13Q8NEE6 735 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 KIF12Q96FN5 646 aa13.54□□□□□ -0.24
USP40-201ENST00000251722 MFAP3LO75121 409 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 ACADSBP45954 432 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 SV2CQ496J9 727 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 FAM133BQ5BKY9 247 aaKnown RBP13.53□□□□□ -0.24
USP40-201ENST00000251722 SWT1Q5T5J6 900 aaKnown RBP13.53□□□□□ -0.24
USP40-201ENST00000251722 C16orf87Q6PH81 154 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 HAUS6Q7Z4H7 955 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 NANOGNBQ7Z5D8 188 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 STKLD1Q8NE28 680 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 EFHD1Q9BUP0 239 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 PARD6BQ9BYG5 372 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 INTS2Q9H0H0 1204 aaKnown RBP13.53□□□□□ -0.24
USP40-201ENST00000251722 POTEB3A0JP26 581 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 POTEMA6NI47 508 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 P4HA2O15460 535 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 FKBP1AP62942 108 aaKnown RBP13.53□□□□□ -0.24
USP40-201ENST00000251722 POTEBQ6S5H4 581 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 DEPDC1BQ8WUY9 529 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 C10orf88Q9H8K7 445 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 NGRNQ9NPE2 291 aaKnown RBP13.53□□□□□ -0.24
USP40-201ENST00000251722 DPP7Q9UHL4 492 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 A8MXQ7 604 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 M0QYV0 167 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 NR3C2P08235 984 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 DR1Q01658 176 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 CASP8Q14790 479 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 MOXD1Q6UVY6 613 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 SPATA2LQ8IUW3 424 aaPredicted RBP13.53□□□□□ -0.24
USP40-201ENST00000251722 SLC35F6Q8N357 371 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 MPP4Q96JB8 637 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 MMTAG2Q9BU76 263 aaKnown RBP13.53□□□□□ -0.24
USP40-201ENST00000251722 GRID2IPA4D2P6 1211 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 MAPRE1Q15691 268 aaKnown RBP13.53□□□□□ -0.24
USP40-201ENST00000251722 Q4G0T1 1027 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 ARRDC4Q8NCT1 418 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 MED15Q96RN5 788 aa13.53□□□□□ -0.24
USP40-201ENST00000251722 ZBTB18Q99592 522 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms