RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 LPLP06858 475 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 GYS2P54840 703 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 CT83Q5H943 113 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 METTL24Q5JXM2 366 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 KRTAP5-3Q6L8H2 238 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 CCDC62Q6P9F0 684 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 GPRIN1Q7Z2K8 1008 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 MRGPRGQ86SM5 289 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 RNF180Q86T96 592 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 XYLT1Q86Y38 959 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 HAS1Q92839 578 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 IL17RAQ96F46 866 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 MLST8Q9BVC4 326 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 WNT8AQ9H1J5 351 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 MAPRE3Q9UPY8 281 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 DMRT1Q9Y5R6 373 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 ZMYM3Q14202 1370 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 FOXN1O15353 648 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 NRP2O60462 931 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 LTA4HP09960 611 aaKnown RBP6.02□□□□□ -1.45
CD44-239ENST00000639002 XPAP23025 273 aaPredicted RBP6.02□□□□□ -1.45
CD44-239ENST00000639002 GZMKP49863 264 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 VPS72Q15906 364 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 ATP13A4Q4VNC1 1196 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 LMBR1LQ6UX01 489 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 DOK3Q7L591 496 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 STRA8Q7Z7C7 330 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 FAM83AQ86UY5 434 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 C11orf74Q86VG3 221 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 THNSL2Q86YJ6 484 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 RSAD2Q8WXG1 361 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 PRRX2Q99811 253 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 TOPORSQ9NS56 1045 aaPredicted RBP6.02□□□□□ -1.45
CD44-239ENST00000639002 FZD1Q9UP38 647 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 NOC2LQ9Y3T9 749 aaKnown RBP6.02□□□□□ -1.45
CD44-239ENST00000639002 HS3ST4Q9Y661 456 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 CDY2AQ9Y6F7 541 aa6.02□□□□□ -1.45
CD44-239ENST00000639002 COL4A3Q01955 1670 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 PTGS2P35354 604 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 WNT3AP56704 352 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 NRG3P56975 720 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 FAM189BP81408 668 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 DUSP2Q05923 314 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 DHCR24Q15392 516 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 SMN1Q16637 294 aaKnown RBP6.01□□□□□ -1.45
CD44-239ENST00000639002 C19orf54Q5BKX5 351 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 ANKS6Q68DC2 871 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 NPM2Q86SE8 214 aaKnown RBP6.01□□□□□ -1.45
CD44-239ENST00000639002 SYT12Q8IV01 421 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 VRK3Q8IV63 474 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 CLRN3Q8NCR9 226 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 OR14C36Q8NHC7 312 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 CPT1CQ8TCG5 803 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 EAF2Q96CJ1 260 aaPredicted RBP6.01□□□□□ -1.45
CD44-239ENST00000639002 TTPALQ9BTX7 342 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 KCTD10Q9H3F6 313 aa6.01□□□□□ -1.45
CD44-239ENST00000639002 LEFTY2O00292 366 aa6□□□□□ -1.45
CD44-239ENST00000639002 RAB11FIP3O75154 756 aa6□□□□□ -1.45
CD44-239ENST00000639002 PROZP22891 400 aa6□□□□□ -1.45
CD44-239ENST00000639002 LGALS4P56470 323 aa6□□□□□ -1.45
CD44-239ENST00000639002 INHBEP58166 350 aa6□□□□□ -1.45
CD44-239ENST00000639002 LAIR1Q6GTX8 287 aa6□□□□□ -1.45
CD44-239ENST00000639002 BTNL9Q6UXG8 535 aa6□□□□□ -1.45
CD44-239ENST00000639002 GLB1L2Q8IW92 636 aa6□□□□□ -1.45
CD44-239ENST00000639002 GLB1L3Q8NCI6 653 aaPredicted RBP6□□□□□ -1.45
CD44-239ENST00000639002 SNX33Q8WV41 574 aa6□□□□□ -1.45
CD44-239ENST00000639002 NDC1Q9BTX1 674 aa6□□□□□ -1.45
CD44-239ENST00000639002 KCNH6Q9H252 994 aa6□□□□□ -1.45
CD44-239ENST00000639002 EPC1Q9H2F5 836 aa6□□□□□ -1.45
CD44-239ENST00000639002 EDARQ9UNE0 448 aa6□□□□□ -1.45
CD44-239ENST00000639002 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.99□□□□□ -1.45
CD44-239ENST00000639002 TRIM24O15164 1050 aa5.99□□□□□ -1.45
CD44-239ENST00000639002 SCAF4O95104 1147 aaKnown RBP5.99□□□□□ -1.45
CD44-239ENST00000639002 CTSSP25774 331 aa5.99□□□□□ -1.45
CD44-239ENST00000639002 APOBEC3AP31941 199 aaPredicted RBP5.99□□□□□ -1.45
CD44-239ENST00000639002 APBA1Q02410 837 aa5.99□□□□□ -1.45
CD44-239ENST00000639002 MBNL2Q5VZF2 373 aaKnown RBP5.99□□□□□ -1.45
CD44-239ENST00000639002 NOP9Q86U38 636 aaKnown RBP5.99□□□□□ -1.45
CD44-239ENST00000639002 CMIPQ8IY22 773 aa5.99□□□□□ -1.45
CD44-239ENST00000639002 UBR7Q8N806 425 aa5.99□□□□□ -1.45
CD44-239ENST00000639002 KCNG1Q9UIX4 513 aa5.99□□□□□ -1.45
CD44-239ENST00000639002 WNT10BO00744 389 aa5.98□□□□□ -1.45
CD44-239ENST00000639002 RAMP2O60895 175 aa5.98□□□□□ -1.45
CD44-239ENST00000639002 ITGB1P05556 798 aa5.98□□□□□ -1.45
CD44-239ENST00000639002 GYPEP15421 78 aa5.98□□□□□ -1.45
CD44-239ENST00000639002 GPR150Q8NGU9 434 aa5.98□□□□□ -1.45
CD44-239ENST00000639002 USP7Q93009 1102 aa5.98□□□□□ -1.45
CD44-239ENST00000639002 CEP95Q96GE4 821 aa5.98□□□□□ -1.45
CD44-239ENST00000639002 TEX101Q9BY14 249 aa5.98□□□□□ -1.45
CD44-239ENST00000639002 IFT22Q9H7X7 185 aa5.98□□□□□ -1.45
CD44-239ENST00000639002 DKK2Q9UBU2 259 aa5.98□□□□□ -1.45
CD44-239ENST00000639002 CHST2Q9Y4C5 530 aa5.98□□□□□ -1.45
CD44-239ENST00000639002 ZEB2O60315 1214 aa5.97□□□□□ -1.45
CD44-239ENST00000639002 PRAMEF4O60810 478 aa5.97□□□□□ -1.45
CD44-239ENST00000639002 ITGA10O75578 1167 aa5.97□□□□□ -1.45
CD44-239ENST00000639002 MEF2AQ02078 507 aaPredicted RBP5.97□□□□□ -1.45
CD44-239ENST00000639002 FSCN1Q16658 493 aaKnown RBP5.97□□□□□ -1.45
CD44-239ENST00000639002 METRNLQ641Q3 311 aa5.97□□□□□ -1.45
CD44-239ENST00000639002 LRRC55Q6ZSA7 311 aa5.97□□□□□ -1.45
CD44-239ENST00000639002 DDX46Q7L014 1031 aaKnown RBP5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 148.4 ms