RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 RTP1P59025 263 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 XKR3Q5GH77 459 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 SND1Q7KZF4 910 aaKnown RBP eCLIP23.26■■□□□ 1.317e-7■□□□□ 8.6
CLN6-224ENST00000638076 PPM1KQ8N3J5 372 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 CNKSR2Q8WXI2 1034 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 ARHGEF26Q96DR7 871 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 IFT74Q96LB3 600 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 FBXL18Q96ME1 805 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 POLR3FQ9H1D9 316 aaPredicted RBP23.26■■□□□ 1.31
CLN6-224ENST00000638076 PLEKHA4Q9H4M7 779 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 PRDM4Q9UKN5 801 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 USP20Q9Y2K6 914 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 ZC3H4Q9UPT8 1303 aaKnown RBP23.26■■□□□ 1.31
CLN6-224ENST00000638076 POLR2AP24928 1970 aaKnown RBP23.26■■□□□ 1.31
CLN6-224ENST00000638076 WDR90Q96KV7 1748 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 ANKRD62A6NC57 917 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 BUB1BO60566 1050 aaPredicted RBP23.26■■□□□ 1.31
CLN6-224ENST00000638076 PHACTR2O75167 634 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 HEXIM1O94992 359 aaKnown RBP23.26■■□□□ 1.31
CLN6-224ENST00000638076 CYP2C19P33261 490 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 EPHB4P54760 987 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 TMEM8AQ9HCN3 771 aa23.26■■□□□ 1.31
CLN6-224ENST00000638076 ZKSCAN7Q9P0L1 754 aaPredicted RBP23.26■■□□□ 1.31
CLN6-224ENST00000638076 LCTP09848 1927 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 TNNC1P63316 161 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 LBX2Q6XYB7 198 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 SEPT14Q6ZU15 432 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 ZNF526Q8TF50 670 aaPredicted RBP23.25■■□□□ 1.31
CLN6-224ENST00000638076 BICD1Q96G01 975 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 MFSD14AQ96MC6 490 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 TOPORSQ9NS56 1045 aaPredicted RBP23.25■■□□□ 1.31
CLN6-224ENST00000638076 AMFRQ9UKV5 643 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 SYF2O95926 243 aaKnown RBP23.25■■□□□ 1.31
CLN6-224ENST00000638076 PPATQ06203 517 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 BRDTQ58F21 947 aaPredicted RBP23.25■■□□□ 1.31
CLN6-224ENST00000638076 TAS1R3Q7RTX0 852 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 KLHL7Q8IXQ5 586 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 IFT20Q8IY31 132 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 RPUSD2Q8IZ73 545 aaKnown RBP23.25■■□□□ 1.31
CLN6-224ENST00000638076 HES6Q96HZ4 224 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 KREMEN1Q96MU8 473 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 EPB41L5Q9HCM4 733 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 GDF3Q9NR23 364 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 BTBD7Q9P203 1132 aa23.25■■□□□ 1.31
CLN6-224ENST00000638076 ZSCAN5CA6NGD5 496 aaPredicted RBP23.24■■□□□ 1.31
CLN6-224ENST00000638076 ICAM3P32942 547 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 GUCY2DQ02846 1103 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 CYP24A1Q07973 514 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 TMC2Q8TDI7 906 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 ZNF302Q9NR11 478 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 ARHGAP28Q9P2N2 729 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 COQ4Q9Y3A0 265 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 PGRMC1O00264 195 aaKnown RBP23.24■■□□□ 1.31
CLN6-224ENST00000638076 DDNO94850 711 aaPredicted RBP23.24■■□□□ 1.31
CLN6-224ENST00000638076 SGPL1O95470 568 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 ATP4AP20648 1035 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 MFAP3P55082 362 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 EMC2Q15006 297 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 FAM71AQ8IYT1 594 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 GPD1LQ8N335 351 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 FBXO41Q8TF61 875 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 SCFD2Q8WU76 684 aa23.24■■□□□ 1.31
CLN6-224ENST00000638076 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.24■■□□□ 1.31
CLN6-224ENST00000638076 ZHX1Q9UKY1 873 aaPredicted RBP23.24■■□□□ 1.31
CLN6-224ENST00000638076 NOC2LQ9Y3T9 749 aaKnown RBP23.24■■□□□ 1.31
CLN6-224ENST00000638076 MAFBQ9Y5Q3 323 aaPredicted RBP23.24■■□□□ 1.31
CLN6-224ENST00000638076 ESYT3A0FGR9 886 aa23.23■■□□□ 1.31
CLN6-224ENST00000638076 DLATP10515 647 aaKnown RBP23.23■■□□□ 1.31
CLN6-224ENST00000638076 ALDH5A1P51649 535 aaPredicted RBP23.23■■□□□ 1.31
CLN6-224ENST00000638076 POLGP54098 1239 aaPredicted RBP23.23■■□□□ 1.31
CLN6-224ENST00000638076 EMBQ6PCB8 327 aa23.23■■□□□ 1.31
CLN6-224ENST00000638076 CSADQ9Y600 493 aa23.23■■□□□ 1.31
CLN6-224ENST00000638076 SYNGAP1Q96PV0 1343 aa23.23■■□□□ 1.31
CLN6-224ENST00000638076 LOC285556D6RIA3 1793 aa23.23■■□□□ 1.31
CLN6-224ENST00000638076 RAD51CO43502 376 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 ATG7O95352 703 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 FTLP02792 175 aaPredicted RBP23.22■■□□□ 1.31
CLN6-224ENST00000638076 GARTP22102 1010 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 GGCXP38435 758 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 GPC3P51654 580 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 USP37Q86T82 979 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 FBXL13Q8NEE6 735 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 TAS1R2Q8TE23 839 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 EPS8L1Q8TE68 723 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 COG5Q9UP83 839 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 CYP26A1O43174 497 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 CARSP49589 748 aaKnown RBP23.22■■□□□ 1.31
CLN6-224ENST00000638076 TAF3Q5VWG9 929 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 NOP9Q86U38 636 aaKnown RBP23.22■■□□□ 1.31
CLN6-224ENST00000638076 RIOX2Q8IUF8 465 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 RASGEF1CQ8N431 466 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 SHC3Q92529 594 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 EXOC4Q96A65 974 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 TMEM143Q96AN5 459 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 FAM213AQ9BRX8 229 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 AP1M1Q9BXS5 423 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 ISCUQ9H1K1 167 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 RAB20Q9NX57 234 aa23.22■■□□□ 1.31
CLN6-224ENST00000638076 ADM5C9JUS6 153 aa23.21■■□□□ 1.31
CLN6-224ENST00000638076 H0YCG3 227 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms