RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 NRBP2Q9NSY0 501 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 TCEAL9Q9UHQ7 104 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 NOTCH4Q99466 2003 aa16.4■□□□□ 0.22
CLN3-249ENST00000636685 TDRD15B5MCY1 1934 aaKnown RBP16.39■□□□□ 0.21
CLN3-249ENST00000636685 NCAM2O15394 837 aa16.39■□□□□ 0.21
CLN3-249ENST00000636685 ZMYND10O75800 440 aa16.39■□□□□ 0.21
CLN3-249ENST00000636685 OR1G1P47890 313 aa16.39■□□□□ 0.21
CLN3-249ENST00000636685 NAPAP54920 295 aa16.39■□□□□ 0.21
CLN3-249ENST00000636685 PRKCEQ02156 737 aa16.39■□□□□ 0.21
CLN3-249ENST00000636685 LILRA6Q6PI73 481 aa16.39■□□□□ 0.21
CLN3-249ENST00000636685 NFXL1Q6ZNB6 911 aa16.39■□□□□ 0.21
CLN3-249ENST00000636685 CATSPER4Q7RTX7 472 aa16.39■□□□□ 0.21
CLN3-249ENST00000636685 FGF13Q92913 245 aa16.39■□□□□ 0.21
CLN3-249ENST00000636685 NELL2Q99435 816 aa16.39■□□□□ 0.21
CLN3-249ENST00000636685 TBC1D22BQ9NU19 505 aa16.39■□□□□ 0.21
CLN3-249ENST00000636685 SAMM50Q9Y512 469 aa16.39■□□□□ 0.21
CLN3-249ENST00000636685 RPL17P18621 184 aaKnown RBP16.38■□□□□ 0.21
CLN3-249ENST00000636685 ADCY7P51828 1080 aa16.38■□□□□ 0.21
CLN3-249ENST00000636685 IL31Q6EBC2 164 aa16.38■□□□□ 0.21
CLN3-249ENST00000636685 B4GALNT3Q6L9W6 998 aa16.38■□□□□ 0.21
CLN3-249ENST00000636685 TMTC3Q6ZXV5 915 aa16.38■□□□□ 0.21
CLN3-249ENST00000636685 COLGALT2Q8IYK4 626 aa16.38■□□□□ 0.21
CLN3-249ENST00000636685 ITFG1Q8TB96 612 aa16.38■□□□□ 0.21
CLN3-249ENST00000636685 DDX1Q92499 740 aaKnown RBP16.38■□□□□ 0.21
CLN3-249ENST00000636685 PHF20Q9BVI0 1012 aa16.38■□□□□ 0.21
CLN3-249ENST00000636685 OSBPL3Q9H4L5 887 aa16.38■□□□□ 0.21
CLN3-249ENST00000636685 KANSL3Q9P2N6 904 aa16.38■□□□□ 0.21
CLN3-249ENST00000636685 GREB1Q4ZG55 1949 aa16.37■□□□□ 0.21
CLN3-249ENST00000636685 SHISA7A6NL88 538 aa16.37■□□□□ 0.21
CLN3-249ENST00000636685 NRLP54845 237 aa16.37■□□□□ 0.21
CLN3-249ENST00000636685 ADCY1Q08828 1119 aa16.37■□□□□ 0.21
CLN3-249ENST00000636685 HDAC1Q13547 482 aaPredicted RBP16.37■□□□□ 0.21
CLN3-249ENST00000636685 UGCGQ16739 394 aa16.37■□□□□ 0.21
CLN3-249ENST00000636685 ZNF852Q6ZMS4 543 aa16.37■□□□□ 0.21
CLN3-249ENST00000636685 MRPL10Q7Z7H8 261 aaKnown RBP16.37■□□□□ 0.21
CLN3-249ENST00000636685 COL26A1Q96A83 441 aa16.37■□□□□ 0.21
CLN3-249ENST00000636685 HEBP1Q9NRV9 189 aa16.37■□□□□ 0.21
CLN3-249ENST00000636685 CHST7Q9NS84 486 aa16.37■□□□□ 0.21
CLN3-249ENST00000636685 ZMIZ1Q9ULJ6 1067 aa16.37■□□□□ 0.21
CLN3-249ENST00000636685 SMCO2A6NFE2 343 aa16.36■□□□□ 0.21
CLN3-249ENST00000636685 CCDC69A6NI79 296 aa16.36■□□□□ 0.21
CLN3-249ENST00000636685 C1QTNF9BB2RNN3 333 aa16.36■□□□□ 0.21
CLN3-249ENST00000636685 C1RP00736 705 aa16.36■□□□□ 0.21
CLN3-249ENST00000636685 C1QTNF9P0C862 333 aa16.36■□□□□ 0.21
CLN3-249ENST00000636685 CLK2P49760 499 aaKnown RBP16.36■□□□□ 0.21
CLN3-249ENST00000636685 AP3B2Q13367 1082 aa16.36■□□□□ 0.21
CLN3-249ENST00000636685 SIM2Q14190 667 aaPredicted RBP16.36■□□□□ 0.21
CLN3-249ENST00000636685 TARBP2Q15633 366 aaKnown RBP16.36■□□□□ 0.21
CLN3-249ENST00000636685 JAKMIP3Q5VZ66 844 aa16.36■□□□□ 0.21
CLN3-249ENST00000636685 CASC1Q6TDU7 716 aa16.36■□□□□ 0.21
CLN3-249ENST00000636685 RHPN2Q8IUC4 686 aa16.36■□□□□ 0.21
CLN3-249ENST00000636685 KSR1Q8IVT5 923 aa16.36■□□□□ 0.21
CLN3-249ENST00000636685 INO80BQ9C086 356 aaPredicted RBP16.36■□□□□ 0.21
CLN3-249ENST00000636685 NDRG2Q9UN36 371 aaKnown RBP16.36■□□□□ 0.21
CLN3-249ENST00000636685 MRPS17Q9Y2R5 130 aaKnown RBP16.36■□□□□ 0.21
CLN3-249ENST00000636685 CNTNAP2Q9UHC6 1331 aa16.36■□□□□ 0.21
CLN3-249ENST00000636685 TMEM150BA6NC51 233 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 WDR64B1ANS9 1081 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 SH2B2O14492 632 aaPredicted RBP16.35■□□□□ 0.21
CLN3-249ENST00000636685 PRC1O43663 620 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 CDC42EP1Q00587 391 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 SRSF5Q13243 272 aaKnown RBP16.35■□□□□ 0.21
CLN3-249ENST00000636685 MTERF2Q49AM1 385 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 UBXN11Q5T124 520 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 PPP1R18Q6NYC8 613 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.35■□□□□ 0.21
CLN3-249ENST00000636685 ZNF687Q8N1G0 1237 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 CRYGNQ8WXF5 182 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 NLRP4Q96MN2 994 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 MBOAT7Q96N66 472 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 SH2D3AQ9BRG2 576 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 GPR62Q9BZJ7 368 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 PLA2G2FQ9BZM2 168 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 CHRDQ9H2X0 955 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.35■□□□□ 0.21
CLN3-249ENST00000636685 AGPAT5Q9NUQ2 364 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 FNIP2Q9P278 1114 aa16.35■□□□□ 0.21
CLN3-249ENST00000636685 SUCLA2Q9P2R7 463 aaPredicted RBP16.35■□□□□ 0.21
CLN3-249ENST00000636685 TM4SF5O14894 197 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 CCL16O15467 120 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 HRO43593 1189 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 CYP3A4P08684 503 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 CALM1P0DP23 149 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 CALM2P0DP24 149 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 CALM3P0DP25 149 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 ZNF410Q86VK4 478 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 FANCBQ8NB91 859 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 MAP4K1Q92918 833 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 CEP89Q96ST8 783 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 DISC1Q9NRI5 854 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 MIOSQ9NXC5 875 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 SEPT9Q9UHD8 586 aaPredicted RBP16.34■□□□□ 0.21
CLN3-249ENST00000636685 FBXW11Q9UKB1 542 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 POLIQ9UNA4 740 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 CNTNAP5Q8WYK1 1306 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 SPAG17Q6Q759 2223 aa16.34■□□□□ 0.21
CLN3-249ENST00000636685 IGKV6-21A0A0C4DH24 114 aa16.33■□□□□ 0.2
CLN3-249ENST00000636685 ADAMTS3O15072 1205 aa16.33■□□□□ 0.2
CLN3-249ENST00000636685 DNM2P50570 870 aa16.33■□□□□ 0.2
CLN3-249ENST00000636685 SETQ01105 290 aaPredicted RBP16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms