RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 SMG8Q8ND04 991 aaKnown RBP20.48■□□□□ 0.87
CLN3-241ENST00000635861 VN1R3Q9BXE9 311 aa20.48■□□□□ 0.87
CLN3-241ENST00000635861 CSRNP2Q9H175 543 aa20.48■□□□□ 0.87
CLN3-241ENST00000635861 SFXN1Q9H9B4 322 aa20.48■□□□□ 0.87
CLN3-241ENST00000635861 MRPL17Q9NRX2 175 aaKnown RBP20.48■□□□□ 0.87
CLN3-241ENST00000635861 SORCS3Q9UPU3 1222 aa20.48■□□□□ 0.87
CLN3-241ENST00000635861 IPPQ9Y573 584 aa20.48■□□□□ 0.87
CLN3-241ENST00000635861 INO80B-WBP1J3KQ70 363 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 NRP1O14786 923 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 ZBTB39O15060 712 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 SOD2P04179 222 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 EPCAMP16422 314 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 TXKP42681 527 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 NUBP1P53384 320 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 PTPN5P54829 565 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 CAPSQ13938 189 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 RARS2Q5T160 578 aaKnown RBP20.47■□□□□ 0.87
CLN3-241ENST00000635861 CABP7Q86V35 215 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 AUTS2Q8WXX7 1259 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 DPP7Q9UHL4 492 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 GIT1Q9Y2X7 761 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 CACNA1HO95180 2353 aa20.47■□□□□ 0.87
CLN3-241ENST00000635861 B4GALT3O60512 393 aa20.46■□□□□ 0.87
CLN3-241ENST00000635861 LILRB3O75022 631 aa20.46■□□□□ 0.87
CLN3-241ENST00000635861 NR1I2O75469 434 aa20.46■□□□□ 0.87
CLN3-241ENST00000635861 POMCP01189 267 aa20.46■□□□□ 0.87
CLN3-241ENST00000635861 MBTD1Q05BQ5 628 aa20.46■□□□□ 0.87
CLN3-241ENST00000635861 SAFBQ15424 915 aaKnown RBP eCLIP20.46■□□□□ 0.87
CLN3-241ENST00000635861 ELMSAN1Q6PJG2 1045 aa20.46■□□□□ 0.87
CLN3-241ENST00000635861 COLGALT2Q8IYK4 626 aa20.46■□□□□ 0.87
CLN3-241ENST00000635861 TDRD5Q8NAT2 981 aaKnown RBP20.46■□□□□ 0.87
CLN3-241ENST00000635861 KLHL5Q96PQ7 755 aa20.46■□□□□ 0.87
CLN3-241ENST00000635861 HERC2P3Q9BVR0 1158 aa20.46■□□□□ 0.87
CLN3-241ENST00000635861 TRIM6Q9C030 488 aaPredicted RBP20.46■□□□□ 0.87
CLN3-241ENST00000635861 TUFT1Q9NNX1 390 aa20.46■□□□□ 0.87
CLN3-241ENST00000635861 TSHZ2Q9NRE2 1034 aa20.46■□□□□ 0.87
CLN3-241ENST00000635861 ARL5CA6NH57 179 aa20.45■□□□□ 0.86
CLN3-241ENST00000635861 C2CD4DB7Z1M9 353 aa20.45■□□□□ 0.86
CLN3-241ENST00000635861 C1RP00736 705 aa20.45■□□□□ 0.86
CLN3-241ENST00000635861 URODP06132 367 aa20.45■□□□□ 0.86
CLN3-241ENST00000635861 CLCN4P51793 760 aa20.45■□□□□ 0.86
CLN3-241ENST00000635861 AFF1P51825 1210 aaKnown RBP20.45■□□□□ 0.86
CLN3-241ENST00000635861 DSC1Q08554 894 aa20.45■□□□□ 0.86
CLN3-241ENST00000635861 AMHR2Q16671 573 aa20.45■□□□□ 0.86
CLN3-241ENST00000635861 C15orf39Q6ZRI6 1047 aa20.45■□□□□ 0.86
CLN3-241ENST00000635861 ALYREFQ86V81 257 aaKnown RBP20.45■□□□□ 0.86
CLN3-241ENST00000635861 GPR65Q8IYL9 337 aa20.45■□□□□ 0.86
CLN3-241ENST00000635861 RNF168Q8IYW5 571 aaPredicted RBP20.45■□□□□ 0.86
CLN3-241ENST00000635861 MCPH1Q8NEM0 835 aa20.45■□□□□ 0.86
CLN3-241ENST00000635861 PRIMPOLQ96LW4 560 aa20.45■□□□□ 0.86
CLN3-241ENST00000635861 IRF2BPLQ9H1B7 796 aa20.45■□□□□ 0.86
CLN3-241ENST00000635861 DBR1Q9UK59 544 aaKnown RBP20.45■□□□□ 0.86
CLN3-241ENST00000635861 JAK2O60674 1132 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 DTNBO60941 627 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 ARF4P18085 180 aaPredicted RBP20.44■□□□□ 0.86
CLN3-241ENST00000635861 GLRA2P23416 452 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 KLRC2P26717 231 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 MRE11P49959 708 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 SLC27A1Q6PCB7 646 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 CYP26C1Q6V0L0 522 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 GPR149Q86SP6 731 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 KREMEN2Q8NCW0 462 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 ASAP3Q8TDY4 903 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 EIF2AQ9BY44 585 aaKnown RBP20.44■□□□□ 0.86
CLN3-241ENST00000635861 RHOBTB2Q9BYZ6 727 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 EFEMP2O95967 443 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 ADH1AP07327 375 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 CNPP09543 421 aaKnown RBP20.44■□□□□ 0.86
CLN3-241ENST00000635861 MLH1P40692 756 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 PPP4R3CPQ6ZMV5 832 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 CMASQ8NFW8 434 aaPredicted RBP20.44■□□□□ 0.86
CLN3-241ENST00000635861 ACSF2Q96CM8 615 aaPredicted RBP20.44■□□□□ 0.86
CLN3-241ENST00000635861 CPB2Q96IY4 423 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 RPS6KC1Q96S38 1066 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 GAD1Q99259 594 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 LLPHQ9BRT6 129 aaKnown RBP20.44■□□□□ 0.86
CLN3-241ENST00000635861 MARCH5Q9NX47 278 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 CDH22Q9UJ99 828 aa20.44■□□□□ 0.86
CLN3-241ENST00000635861 A0A1B0GUA9 196 aa20.43■□□□□ 0.86
CLN3-241ENST00000635861 POTEMA6NI47 508 aa20.43■□□□□ 0.86
CLN3-241ENST00000635861 SPDYE4A6NLX3 237 aa20.43■□□□□ 0.86
CLN3-241ENST00000635861 MUTP22033 750 aa20.43■□□□□ 0.86
CLN3-241ENST00000635861 SP100P23497 879 aaPredicted RBP20.43■□□□□ 0.86
CLN3-241ENST00000635861 OR1G1P47890 313 aa20.43■□□□□ 0.86
CLN3-241ENST00000635861 GLUD2P49448 558 aa20.43■□□□□ 0.86
CLN3-241ENST00000635861 CCDC149Q6ZUS6 474 aa20.43■□□□□ 0.86
CLN3-241ENST00000635861 C12orf76Q8N812 135 aaPredicted RBP20.43■□□□□ 0.86
CLN3-241ENST00000635861 PRSS33Q8NF86 280 aa20.43■□□□□ 0.86
CLN3-241ENST00000635861 ERMNQ8TAM6 284 aa20.43■□□□□ 0.86
CLN3-241ENST00000635861 NACC1Q96RE7 527 aa20.43■□□□□ 0.86
CLN3-241ENST00000635861 POLR3CQ9BUI4 534 aaPredicted RBP20.43■□□□□ 0.86
CLN3-241ENST00000635861 COLEC11Q9BWP8 271 aa20.43■□□□□ 0.86
CLN3-241ENST00000635861 POLR3FQ9H1D9 316 aaPredicted RBP20.43■□□□□ 0.86
CLN3-241ENST00000635861 PRMT7Q9NVM4 692 aaPredicted RBP20.43■□□□□ 0.86
CLN3-241ENST00000635861 TRIP11Q15643 1979 aa20.42■□□□□ 0.86
CLN3-241ENST00000635861 DOCK8Q8NF50 2099 aa20.42■□□□□ 0.86
CLN3-241ENST00000635861 WNT7AO00755 349 aa20.42■□□□□ 0.86
CLN3-241ENST00000635861 SPATA31C1P0DKV0 1188 aa20.42■□□□□ 0.86
CLN3-241ENST00000635861 SCNN1GP51170 649 aa20.42■□□□□ 0.86
CLN3-241ENST00000635861 FAM187BQ17R55 369 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms