RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CLSTN1O94985 981 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 FTLP02792 175 aaPredicted RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 PGK2P07205 417 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 FAM153BP0C7A2 387 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 MAPTP10636 758 aaKnown RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 LMNB1P20700 586 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 ACOT2P49753 483 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 GUCY2FP51841 1108 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 GPS2Q13227 327 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 LLGL1Q15334 1064 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 FAM153CQ494X1 144 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 MAP9Q49MG5 647 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 HSP90B2PQ58FF3 399 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 TAS1R3Q7RTX0 852 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 PARD3BQ8TEW8 1205 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 TATDN2Q93075 761 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 ZNF668Q96K58 619 aaPredicted RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 ZBTB45Q96K62 511 aaPredicted RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 SYT11Q9BT88 431 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 DDX47Q9H0S4 455 aaKnown RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 FAM153AQ9UHL3 310 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 SPATA31C2B4DYI2 1134 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 RAD51CO43502 376 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 SYF2O95926 243 aaKnown RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 POLGP54098 1239 aaPredicted RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 OAZ1P54368 228 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 WNT7BP56706 349 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 ZNF211Q13398 564 aaPredicted RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 STXBP2Q15833 593 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 GNPTABQ3T906 1256 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 AADACL2Q6P093 401 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 PHLDB2Q86SQ0 1253 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 NOP9Q86U38 636 aaKnown RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 DDX42Q86XP3 938 aaKnown RBP eCLIP11.49□□□□□ -0.57
CUX1-221ENST00000622516 MAP4K3Q8IVH8 894 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 USP38Q8NB14 1042 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 PCDHB18PQ96TA0 734 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 HARSP12081 509 aaKnown RBP11.48□□□□□ -0.57
CUX1-221ENST00000622516 MCM3P25205 808 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 LMAN1P49257 510 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 ALCAMQ13740 583 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 SCARA3Q6AZY7 606 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 NT5DC3Q86UY8 548 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 CPNE8Q86YQ8 564 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 TSEN2Q8NCE0 465 aaKnown RBP11.48□□□□□ -0.57
CUX1-221ENST00000622516 AENQ8WTP8 325 aaKnown RBP11.48□□□□□ -0.57
CUX1-221ENST00000622516 BTBD6Q96KE9 485 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 NR2E1Q9Y466 385 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 LOXHD1Q8IVV2 1947 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 LRRIQ4A6NIV6 560 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 MAFGO15525 162 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 DGAT1O75907 488 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 MMEP08473 750 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 MARK3P27448 753 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 SSTR3P32745 418 aaPredicted RBP11.48□□□□□ -0.57
CUX1-221ENST00000622516 DRP2Q13474 957 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 MYBPC2Q14324 1141 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 C2CD6Q53TS8 623 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 WDR78Q5VTH9 848 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 SV2AQ7L0J3 742 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 ST6GALNAC4Q9H4F1 302 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 EXOC7Q9UPT5 735 aa11.48□□□□□ -0.57
CUX1-221ENST00000622516 ZC3H4Q9UPT8 1303 aaKnown RBP11.47□□□□□ -0.57
CUX1-221ENST00000622516 BTNL10A8MVZ5 291 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 AGPSO00116 658 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 SUPT20HL2P0C7V6 817 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 PPARDQ03181 441 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 ITIH3Q06033 890 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 TTLL12Q14166 644 aaPredicted RBP11.47□□□□□ -0.57
CUX1-221ENST00000622516 LY6KQ17RY6 165 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 ZBTB41Q5SVQ8 909 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 TMEM63BQ5T3F8 832 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 KRT39Q6A163 491 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 XRRA1Q6P2D8 792 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 C12orf56Q8IXR9 622 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 SAMD3Q8N6K7 520 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 KIFAP3Q92845 792 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 IWS1Q96ST2 819 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 ATP6V0A4Q9HBG4 840 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 ZNF302Q9NR11 478 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.47□□□□□ -0.57
CUX1-221ENST00000622516 CTTNBP2NLQ9P2B4 639 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 ANKFY1Q9P2R3 1169 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 NOC2LQ9Y3T9 749 aaKnown RBP11.47□□□□□ -0.57
CUX1-221ENST00000622516 RNF40O75150 1001 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 KIF22Q14807 665 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 EMC2Q15006 297 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 IFI16Q16666 785 aaKnown RBP11.47□□□□□ -0.57
CUX1-221ENST00000622516 MIS18BP1Q6P0N0 1132 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 SULF1Q8IWU6 871 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 ASAP3Q8TDY4 903 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 CASKIN2Q8WXE0 1202 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 RFFLQ8WZ73 363 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 ZBTB10Q96DT7 871 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 SENP7Q9BQF6 1050 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 NTPCRQ9BSD7 190 aaKnown RBP11.47□□□□□ -0.57
CUX1-221ENST00000622516 CELF4Q9BZC1 486 aaKnown RBP11.47□□□□□ -0.57
CUX1-221ENST00000622516 PDLIM7Q9NR12 457 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 AMACRQ9UHK6 382 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms