RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 SYT11Q9BT88 431 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 AGO4Q9HCK5 861 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 COL11A2P13942 1736 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 NCANO14594 1321 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 ZNF536O15090 1300 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 ICAM1P05362 532 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 PYGMP11217 842 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 PTENP60484 403 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 SNRNP35Q16560 246 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 SELENOSQ9BQE4 189 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 NUP85Q9BW27 656 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 CARD9Q9H257 536 aa13.93□□□□□ -0.18
CCDC88A-214ENST00000621814 CAND2O75155 1236 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 MTMR3Q13615 1198 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 C1orf220Q5T0J3 134 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 ATP8B4Q8TF62 1192 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 ZNF653Q96CK0 615 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 RMDN3Q96TC7 470 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 NAP1L3Q99457 506 aaPredicted RBP13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 PNMA2Q9UL42 364 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 PHF20L1A8MW92 1017 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 PLSCR1O15162 318 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 FGFR4P22455 802 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 NFIL3Q16649 462 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 SPDYE2Q495Y8 402 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 CCDC137Q6PK04 289 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 LRIG3Q6UXM1 1119 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 RHOT2Q8IXI1 618 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 ARFGAP2Q8N6H7 521 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 PRPF38AQ8NAV1 312 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 SUPT20HQ8NEM7 779 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 DNAJC17Q9NVM6 304 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 FZD1Q9UP38 647 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 UBE4BO95155 1302 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 DENND3A2RUS2 1198 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 A6NNZ2 444 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 ASNSP08243 561 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 VCAM1P19320 739 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 PPP2R2AP63151 447 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 POU5F1Q01860 360 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 RASA3Q14644 834 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 TUBB8Q3ZCM7 444 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 SEL1L2Q5TEA6 688 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 ARHGEF16Q5VV41 709 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 DAB2IPQ5VWQ8 1189 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 B3GNT9Q6UX72 402 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 SYTL5Q8TDW5 730 aaPredicted RBP13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 CLEC4DQ8WXI8 215 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 KAT2BQ92831 832 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 BICD1Q96G01 975 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 KREMEN1Q96MU8 473 aa13.92□□□□□ -0.18
CCDC88A-214ENST00000621814 PMS2P54278 862 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 SLC29A2Q14542 456 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 TTC27Q6P3X3 843 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 ZDHHC14Q8IZN3 488 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 KCTD17Q8N5Z5 321 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 ZNF564Q8TBZ8 553 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 TAS1R2Q8TE23 839 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 EPS8L1Q8TE68 723 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 POMGNT1Q8WZA1 660 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 STRA6Q9BX79 667 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 TRPC6Q9Y210 931 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 TELO2Q9Y4R8 837 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 CNGA1P29973 690 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 ADSSP30520 456 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 PTGER2P43116 358 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 HSD17B4P51659 736 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 TRIP13Q15645 432 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 QPCTQ16769 361 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 LLGL2Q6P1M3 1020 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 SLC9A9Q8IVB4 645 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 PRELID2Q8N945 189 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 C1orf54Q8WWF1 131 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 TATDN2Q93075 761 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 ZSWIM1Q9BR11 485 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 SEMA4AQ9H3S1 761 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 PCNTO95613 3336 aa13.91□□□□□ -0.18
CCDC88A-214ENST00000621814 ASTN2O75129 1339 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 GMNCA6NCL1 334 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 RTN2O75298 545 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 CCNE2O96020 404 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 CHRNB2P17787 502 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 RPL21P46778 160 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 CCDC38Q502W7 563 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 DENND2CQ68D51 928 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 CPLX4Q7Z7G2 160 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 CEP170P1Q96L14 293 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 PSMD1Q99460 953 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 FAM118BQ9BPY3 351 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 RASAL2Q9UJF2 1139 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 WNT10BO00744 389 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 MEFVO15553 781 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 VPS41P49754 854 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 SMTNP53814 917 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 MTMR2Q13614 643 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 DUPD1Q68J44 220 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 TTLL6Q8N841 843 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 CYFIP2Q96F07 1278 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 WNK4Q96J92 1243 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms