RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 PRELID1Q9Y255 219 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 COL4A3BPQ9Y5P4 624 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 ZMPSTE24O75844 475 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 CTDNEP1O95476 244 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 SERPINB5P36952 375 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 NAT14Q8WUY8 206 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 CAB39Q9Y376 341 aaPredicted RBP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 AFG3L2Q9Y4W6 797 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 H0YIN7 160 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 AGTP01019 485 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 AP1B1Q10567 949 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 CHI3L2Q15782 390 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 PTPN20Q4JDL3 420 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 TMEM87BQ96K49 555 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 NMRK1Q9NWW6 199 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 PHTF1Q9UMS5 762 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 ORC6Q9Y5N6 252 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 PPP1R3GB7ZBB8 358 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 SP100P23497 879 aaPredicted RBP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 IFNLR1Q8IU57 520 aaPredicted RBP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 SLC30A5Q8TAD4 765 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 SEPT8Q92599 483 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 CNOT8Q9UFF9 292 aaKnown RBP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 NAA20P61599 178 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 AKIRIN2Q53H80 203 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 NLRP9Q7RTR0 991 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 SULF1Q8IWU6 871 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 PPM1KQ8N3J5 372 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 EPAS1Q99814 870 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 SNRPA1P09661 255 aaKnown RBP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 KIAA1755Q5JYT7 1200 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 B3GNT6Q6ZMB0 384 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 CYB5R4Q7L1T6 521 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 VPS11Q9H270 941 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 TPST1O60507 370 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 STARD3NLO95772 234 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 UBXN2AP68543 259 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 TRAF2Q12933 501 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 DCTN2Q13561 401 aaKnown RBP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 GCKRQ14397 625 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 GJB7Q6PEY0 223 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 CCDC137Q6PK04 289 aaKnown RBP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 OR8H2Q8N162 312 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 RERGLQ9H628 205 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 CTNNAL1Q9UBT7 734 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 NIP7Q9Y221 180 aaKnown RBP eCLIP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 SNAPC4Q5SXM2 1469 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 ENO3P13929 434 aaPredicted RBP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 ADAM17P78536 824 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 OCRLQ01968 901 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 KCNA1Q09470 495 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 RASA2Q15283 850 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 SUPT6HQ7KZ85 1726 aaKnown RBP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 SYCE1LA8MT33 242 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 SH2B2O14492 632 aaPredicted RBP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 IFI30P13284 250 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 CD58P19256 250 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 PDK3Q15120 406 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 RYBPQ8N488 228 aaPredicted RBP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 NCLNQ969V3 563 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 TMEM79Q9BSE2 394 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 TMEM120AQ9BXJ8 343 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 USP40Q9NVE5 1235 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 MTO1Q9Y2Z2 717 aaKnown RBP5.34□□□□□ -1.55
VPS13D-214ENST00000620676 EHBP1L1Q8N3D4 1523 aa5.34□□□□□ -1.55
VPS13D-214ENST00000620676 RAG1P15918 1043 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 PMLP29590 882 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 PTK2Q05397 1052 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 CTTNQ14247 550 aaKnown RBP5.34□□□□□ -1.56
VPS13D-214ENST00000620676 FAM83BQ5T0W9 1011 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 RTCBQ9Y3I0 505 aaKnown RBP5.34□□□□□ -1.56
VPS13D-214ENST00000620676 LDHCP07864 332 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 RTP1P59025 263 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 LZICQ8WZA0 190 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 CLPTM1LQ96KA5 538 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 FOSP01100 380 aaPredicted RBP5.34□□□□□ -1.56
VPS13D-214ENST00000620676 SERPINB8P50452 374 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 TBC1D10CQ8IV04 446 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 SYTL1Q8IYJ3 562 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 SLC4A11Q8NBS3 891 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 TGFBRAP1Q8WUH2 860 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 METTL22Q9BUU2 404 aaPredicted RBP5.34□□□□□ -1.56
VPS13D-214ENST00000620676 PIF1Q9H611 641 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 POTEFA5A3E0 1075 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 GPC4O75487 556 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 GNA11P29992 359 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 LSM3P62310 102 aaKnown RBP5.34□□□□□ -1.56
VPS13D-214ENST00000620676 IZUMO3Q5VZ72 239 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 POTEEQ6S8J3 1075 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 CLVS1Q8IUQ0 354 aaPredicted RBP5.34□□□□□ -1.56
VPS13D-214ENST00000620676 TSSK1BQ9BXA7 367 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 AGAP1Q9UPQ3 857 aa5.34□□□□□ -1.56
VPS13D-214ENST00000620676 TRIM64CA6NLI5 447 aa5.33□□□□□ -1.56
VPS13D-214ENST00000620676 NFIBO00712 420 aa5.33□□□□□ -1.56
VPS13D-214ENST00000620676 KIF19Q2TAC6 998 aa5.33□□□□□ -1.56
VPS13D-214ENST00000620676 PRUNE1Q86TP1 453 aa5.33□□□□□ -1.56
VPS13D-214ENST00000620676 RNF34Q969K3 372 aa5.33□□□□□ -1.56
VPS13D-214ENST00000620676 EIF2AQ9BY44 585 aaKnown RBP5.33□□□□□ -1.56
VPS13D-214ENST00000620676 MARCH7Q9H992 704 aa5.33□□□□□ -1.56
VPS13D-214ENST00000620676 ASNA1O43681 348 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms