RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CASD1Q96PB1 797 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 TRIM9Q9C026 710 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 SCAND2PQ9GZW5 306 aaPredicted RBP14.86□□□□□ -0.03
LINC00540-202ENST00000616974 MTMR10Q9NXD2 777 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 PLAGL2Q9UPG8 496 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 IPPQ9Y573 584 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 INSL6Q9Y581 213 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 CNTNAP2Q9UHC6 1331 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 PDCD11Q14690 1871 aaKnown RBP14.86□□□□□ -0.03
LINC00540-202ENST00000616974 A0A1B0GUA9 196 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 TBKBP1A7MCY6 615 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 ABLIM1O14639 778 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 FAM13AO94988 1023 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 CDC42EP1Q00587 391 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 ZNF697Q5TEC3 545 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 ZBTB8OSQ8IWT0 167 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 ZSWIM2Q8NEG5 633 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 TMEM161AQ9NX61 479 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 MIOSQ9NXC5 875 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 CHMP5Q9NZZ3 219 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 KLK14Q9P0G3 267 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 INPP5FQ9Y2H2 1132 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 PCDHB7Q9Y5E2 793 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 ATP6V1DQ9Y5K8 247 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 BDP1A6H8Y1 2624 aa14.85□□□□□ -0.03
LINC00540-202ENST00000616974 F8W810 466 aa14.85□□□□□ -0.03
LINC00540-202ENST00000616974 K7ERI5 159 aa14.85□□□□□ -0.03
LINC00540-202ENST00000616974 ACKR2O00590 384 aa14.85□□□□□ -0.03
LINC00540-202ENST00000616974 LPXNO60711 386 aa14.85□□□□□ -0.03
LINC00540-202ENST00000616974 MYBP10242 640 aa14.85□□□□□ -0.03
LINC00540-202ENST00000616974 NCKAP1LP55160 1127 aa14.85□□□□□ -0.03
LINC00540-202ENST00000616974 PRPF4BQ13523 1007 aaKnown RBP14.85□□□□□ -0.03
LINC00540-202ENST00000616974 MAPK6Q16659 721 aa14.85□□□□□ -0.03
LINC00540-202ENST00000616974 SLC39A4Q6P5W5 647 aa14.85□□□□□ -0.03
LINC00540-202ENST00000616974 HAUS6Q7Z4H7 955 aa14.85□□□□□ -0.03
LINC00540-202ENST00000616974 CDX2Q99626 313 aaPredicted RBP14.85□□□□□ -0.03
LINC00540-202ENST00000616974 NTPCRQ9BSD7 190 aaKnown RBP14.85□□□□□ -0.03
LINC00540-202ENST00000616974 PARVGQ9HBI0 331 aa14.85□□□□□ -0.03
LINC00540-202ENST00000616974 TYW1Q9NV66 732 aaKnown RBP14.85□□□□□ -0.03
LINC00540-202ENST00000616974 LRFN2Q9ULH4 789 aa14.85□□□□□ -0.03
LINC00540-202ENST00000616974 K7ENM7 598 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 SLC26A4O43511 780 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 TRAK2O60296 914 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 HARSP12081 509 aaKnown RBP14.84□□□□□ -0.03
LINC00540-202ENST00000616974 IGFBP6P24592 240 aaPredicted RBP14.84□□□□□ -0.03
LINC00540-202ENST00000616974 OSTNP61366 133 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 BTG3Q14201 252 aaPredicted RBP14.84□□□□□ -0.03
LINC00540-202ENST00000616974 RAB30Q15771 203 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 ZBTB41Q5SVQ8 909 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 PPP4R3CPQ6ZMV5 832 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 ZBTB33Q86T24 672 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 TMEM173Q86WV6 379 aaPredicted RBP14.84□□□□□ -0.03
LINC00540-202ENST00000616974 RABGGTAQ92696 567 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 KCND2Q9NZV8 630 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 ODF2LQ9ULJ1 636 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 CIZ1Q9ULV3 898 aaPredicted RBP14.84□□□□□ -0.03
LINC00540-202ENST00000616974 NT5C1B-RDH14C9J2C7 533 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 SNW1Q13573 536 aaKnown RBP14.84□□□□□ -0.03
LINC00540-202ENST00000616974 PPP2R5AQ15172 486 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 FAM187BQ17R55 369 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 NOTUMQ6P988 496 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 ZNF280BQ86YH2 543 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 ZNF710Q8N1W2 664 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 IQUBQ8NA54 791 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 GSTCDQ8NEC7 633 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 SPIRE2Q8WWL2 714 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 PAGE5Q96GU1 130 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 ACO2Q99798 780 aaKnown RBP14.84□□□□□ -0.03
LINC00540-202ENST00000616974 CWH43Q9H720 699 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 CHST12Q9NRB3 414 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 C1orf112Q9NSG2 853 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 PRMT7Q9NVM4 692 aaPredicted RBP14.84□□□□□ -0.03
LINC00540-202ENST00000616974 SNTG2Q9NY99 539 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 DACT1Q9NYF0 836 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 DNAJB4Q9UDY4 337 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 PCDHGC5Q9Y5F6 944 aa14.84□□□□□ -0.03
LINC00540-202ENST00000616974 PHLPP2Q6ZVD8 1323 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 FRMD3A2A2Y4 597 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 ANKRD63C9JTQ0 380 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 TBCAO75347 108 aaKnown RBP14.83□□□□□ -0.04
LINC00540-202ENST00000616974 MLH1P40692 756 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 ATF7IP2Q5U623 682 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 KCTD17Q8N5Z5 321 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 MRPS27Q92552 414 aaKnown RBP14.83□□□□□ -0.04
LINC00540-202ENST00000616974 GAD1Q99259 594 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 PTPRHQ9HD43 1115 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 FAM13BQ9NYF5 915 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 ANKFY1Q9P2R3 1169 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 GDAQ9Y2T3 454 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 FAM237AA0A1B0GTK4 181 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 KLRC4O43908 158 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 POMCP01189 267 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 DNAJB1P25685 340 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 HOXD13P35453 343 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 SYKP43405 635 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 ASIC1P78348 528 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 COASYQ13057 564 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 EPC2Q52LR7 807 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 SLC27A1Q6PCB7 646 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 FAM178BQ8IXR5 827 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms